Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0175 ATGTCCAAAGTTCTTGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGGTCAATATATGCCAACCCCAAGGAAGCAAGCTTCTTCCTGCCTCTTGGCCATCAAGTTGATGTATACTTTCCTCCTCGGAAGAGATCACGTGTCAGTGCTCCATATGTTTTCAGTGGCGAATGGTTTGAGCAAAAGCAGAAAACCTCTATTGAAGCCTTGCCTGATGAATGTATTTTTGAGATCTTTAGAAGGTTGCCTGCAGGCGAAGAAAGGAGTGCATGTGCTTGTGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTCTAAGAATGAAATTTGCAGCAACAAAAGTACTGGCCTACAGACCAAGAGTAAAGAGGAGGAGGATGATGTAGAATTTGGGGGTGAGGGATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGGACTGCATCCCGAGGAGGATTGGGGAAGCTCTCTATCCGTGGAAGCAACACTGTTCGTGGGGTGACTACTCTAGGTCTTAAAGCAGTTGCTCATGGATGTCCTTCTTTGAAGGCTCTTTCTCTATGGAATGTTGCTACCGTTGGTGATGAAGGCCTGATTGAGATTGCTAATGGATGTCAACAGCTAGAGAAGCTTGACCTTTGCAAGTGCCCTGCAATTTCTGACAAGGGTTTAATTGCAGTTGCAAAGAACTGCCGGAATCTGACCGAGTTATCATTAGAATCTTGTCCAAACATTGGTAATGAAGGTTTACAAGCCATTGGGAAGTACTGCTCCAATCTTAGGTCCATATCTATCAAGGACTGCGCTGGCATCAGAGATCAAGGAATTGCTGGCCTGTTTTCTTCAACTTCTTTGGTTCTGACAAAGGTGAAGCTCCAGGCACTGACTGTTTCTGATCTCTCTCTAGCTGTTATTGGACATTATGGAAAATCAGTTACAGATCTTGTTCTAAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTTTGGGTTATGGGTAATGGTAATGGATTGCAGAAGCTAAAATCACTTACAGTGGCATCTTGCAGAGGAGTGACAGATATTGGGCTTGAAGCTGTAGGTAAGGGTTGTCCAAATCTGAAAAGTGCACACCTTCACAAGTGTGCATTTCTGTCAGACAACGGTTTGATATCATTCGCCAAGGGAGCTTCATCACTTGAGAGCCTCCGATTGGAAGAGTGCCACAGAATTACCCAACTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATTTCTCTGGTGAGCTGCTATGGAATCAAAGATCTAAATTTGATGTTGTCAACTGTATCTCCTTGTGAGTCACTTAGGTCATTATCTATCTCCAACTGCCCTGGATTTGGCAACGCTAGCCTGTCTGTATTGGGAAAGCTGTGCCCTCAGCTTCAGCATATTGAATTAAGTGGACTAGAGGGAGTGACAGATGCAGGGCTTCTTCCACTGCTTGAGAGCTCTGAGGCTGGTTTGGTTAAAGTGAATCTTAGTGGTTGCATAAATCTTTCCGACAAAGTTGTTTCATCCCTGGCCAATCTGCATGGTTGGACTCTTGAGACTCTGAACCTTGATGGCTGTAAAAATATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAATTGCCCATTGCTAAGTGATCTTGATGTTTCCAAGTGTGCAATCACAGATGCTGGGATAGCAGCCGTGGCACATGCCAAACAATTTAATCCGCAGGTTCTTTCTTTGTCAGGTTGCACTTTGGTCTCAGACAGGAGCTTGCCTGCTTTGCGAAAACTGGGCCAAACCCTTTTGGGACTAAACATCCAGCATTGCAATGCCATCAGCAGCAGCATCGTTGACATGCTTGTGGAACTTCTATGGAGGTGTGACATCCTCTCTTGA 1938 0.4515 MSKVLGFSGGDDFCPGGSIYANPKEASFFLPLGHQVDVYFPPRKRSRVSAPYVFSGEWFEQKQKTSIEALPDECIFEIFRRLPAGEERSACACVSKRWLMLLSSISKNEICSNKSTGLQTKSKEEEDDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNTVRGVTTLGLKAVAHGCPSLKALSLWNVATVGDEGLIEIANGCQQLEKLDLCKCPAISDKGLIAVAKNCRNLTELSLESCPNIGNEGLQAIGKYCSNLRSISIKDCAGIRDQGIAGLFSSTSLVLTKVKLQALTVSDLSLAVIGHYGKSVTDLVLNCLPNVSERGFWVMGNGNGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKSAHLHKCAFLSDNGLISFAKGASSLESLRLEECHRITQLGFFGVLFNCGAKLKAISLVSCYGIKDLNLMLSTVSPCESLRSLSISNCPGFGNASLSVLGKLCPQLQHIELSGLEGVTDAGLLPLLESSEAGLVKVNLSGCINLSDKVVSSLANLHGWTLETLNLDGCKNISDASLMAIAENCPLLSDLDVSKCAITDAGIAAVAHAKQFNPQVLSLSGCTLVSDRSLPALRKLGQTLLGLNIQHCNAISSSIVDMLVELLWRCDILS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0175 645 Gene3D Ribonuclease Inhibitor 446 645 IPR032675 -
Apr9g0175 645 SMART LRR_CC_2 590 611 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 190 215 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 454 479 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 560 584 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 216 241 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 268 293 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 480 505 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 534 559 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 242 267 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 348 373 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 507 532 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 400 425 IPR006553 -
Apr9g0175 645 SMART LRR_CC_2 374 399 IPR006553 -
Apr9g0175 645 SUPERFAMILY RNI-like 185 296 - -
Apr9g0175 645 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Apr9g0175 645 SUPERFAMILY RNI-like 309 641 - -
Apr9g0175 645 SMART fbox_2 70 111 IPR001810 GO:0005515
Apr9g0175 645 Pfam Leucine Rich repeat 560 582 IPR001611 GO:0005515
Apr9g0175 645 Pfam Leucine Rich repeat 536 557 IPR001611 GO:0005515
Apr9g0175 645 Pfam Leucine Rich repeat 241 264 IPR001611 GO:0005515
Apr9g0175 645 PANTHER - 16 634 - -
Apr9g0175 645 Gene3D Ribonuclease Inhibitor 242 445 IPR032675 -
Apr9g0175 645 Gene3D Ribonuclease Inhibitor 140 241 IPR032675 -
Apr9g0175 645 Pfam F-box domain 70 106 IPR001810 GO:0005515
Apr9g0175 645 PANTHER UNCHARACTERIZED 16 634 - -
Apr9g0175 645 Gene3D - 60 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0175 Apr-Chr9 2280810 2284602 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0175 K14515 - gmx:100820247 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0175 9 2280810 2284602 Apr9g0175 9 2280810 2284602 ECH
Apr9g0175 9 2280810 2284602 Apr5g1260 5 16960477 16964348 PCT