Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1260 ATGTCTAAAGTCTTCAGCTTTACCGGTAGTGATGATTTTTGCCCTGGGGGGTCTATCTACCCTAACCCCAAGGAAGCGAGTCTCTTCTTGTCTCTTGGCCATCGAGTTGACGTTTGCTTTCCGCGTCAGAAGAGGACTCGTCTCAGTGTTCCGCTTGATATCAGTGGAGAATGGTTTGTGCAGAAGCAGAAGACATCTATTGAATCTTTGCCAGATGAATGCCTCTTCGAAATCCTTAGAAGGTTGCCGGCAGGCCAAGATAGGAGCGCATGTGCTTCTGTATCCAAGCGCTGGCTTATGCTCTTAAGCAGTATTTGTAAGAATGAAATCTGCAGCAGTGATAGTGCTGGGAGTGAAAAAGAGTTTAGTGAAAAGGGGGGTGAAGATCAGGAATTTGGTGATGAAGGATTCCTCTCCCGAAGCTTGGAGGGAAAGAAAGCAACAGATGTTAGACTTGCTGCCATTTCCGTTGGGACAGCATCTCGAGGAGGACTGGGGAAACTTTTGATTCGCGGATGCAGTTCAGATCGTGGGGTGACTGATGTAGGTCTCAAGGCAATTGCTCATGGATGCCCCTCACTAAAGGTTCTCTCTCTATGGGATGTCGCTACCATAACTGATGAAGGCCTGAGTGAGATTGCTAATGGTTGTCACCAGTTAGAGAAGCTTGACCTTTGCAAGTGCCCAGCAATTACTGATAATGCTTTAATTGCTGTTGCAAAAAAGTGCCCAAATCTATCTGAGTTATCTATAGAGTCGTGTCCAAACATTGGTAATGAAGGTCTACAAGCTATTGGGAAATGGTGTTCCAATCTAAGGTCTATCTCCATCAAGGATTGTTTTGGAGTTGGTGATCAGGGAATTGCCGGTCTCTTGTCTTCAGCTTCCTTTGTTCTAACAAAGGTGAAGCTTGAATCACTGATTGTTTCTGATCTCTCTCTAGCAGTGATTGGACATTATGGGTTTGCAGTTACAGATCTTGTCCTAAATTGCCTCCCAAATGTCAGTGAGAAAGGGTTCTGGGTAATGGGTAATGGTCGTGGACTCCAGAAACTAACTTCACTCACAATTGGATGCTGCCAAGGAGCAACAGATATTGGGCTTGAAGCTATAGGAAAGGGTTGTCCAAATGTGAAGAACTTCCAGCTTCGTAAGTGTGCATTTCTGTCAGACAATGGGTTGGTATCATTTACCAAGGTTGCTCCATCAATTGAGAGCCTACACTTGGAAGAGTGCCACAGAATTACCCAATTTGGATTTTTTGGGGTCCTTTTAAACTGTGGTGCAAAATTGAAGGATCTCACTCTGATAAGCTGCTATGGAATCAAAGATCTGAATTTGGAATTGCCGGCAGTGTCTCCTTGTGAATCAATTTGGTCACTAACAATCCGTGACTGTCCTGGATTTGGCAATGCTACCCTTGCTTTACTTGGAAGGCTATGTCCTCAGCTTCAGCATGTTGAATTGAGCGGACTTCAGGGAATTACAGATGCAGGGTTTCTTCCACTGCTCGAGAGCTCCAAGGCTGGTTTGGTTAAAGTCAATCTAAGTGGTTGCATAAATCTGACTGATACAGTAGTCTTGTCCATGGTCAAGTCACATGGATGGACACTTGAGGTGCTAAACCTTGATGGTTGTATAAAAGTCAGCGATGCTAGCTTGATGGCCATGGCAGGAAATTGCCCACTGCTTTGTGATCTTGATCTTTCAAAGTGTACAATCACTGATACTGGGATTGCAGCCCTCGCACGTGGAAAGCAGCTCAACCTGGAGGTACTTTCTTTGTCAGGTTGCACAATGGTTTCAGACAAGAGCATGTCCTCATTGAAAAAATTGGGCCATACCCTTGTTGGATTAAATATCAAGCGCTGCAACGCAATCAGCAGCCGCTCCATTGACAGGCTTACGGAACATCTTTGGATGTGTGACATCCTCTCCTGA 1941 0.4508 MSKVFSFTGSDDFCPGGSIYPNPKEASLFLSLGHRVDVCFPRQKRTRLSVPLDISGEWFVQKQKTSIESLPDECLFEILRRLPAGQDRSACASVSKRWLMLLSSICKNEICSSDSAGSEKEFSEKGGEDQEFGDEGFLSRSLEGKKATDVRLAAISVGTASRGGLGKLLIRGCSSDRGVTDVGLKAIAHGCPSLKVLSLWDVATITDEGLSEIANGCHQLEKLDLCKCPAITDNALIAVAKKCPNLSELSIESCPNIGNEGLQAIGKWCSNLRSISIKDCFGVGDQGIAGLLSSASFVLTKVKLESLIVSDLSLAVIGHYGFAVTDLVLNCLPNVSEKGFWVMGNGRGLQKLTSLTIGCCQGATDIGLEAIGKGCPNVKNFQLRKCAFLSDNGLVSFTKVAPSIESLHLEECHRITQFGFFGVLLNCGAKLKDLTLISCYGIKDLNLELPAVSPCESIWSLTIRDCPGFGNATLALLGRLCPQLQHVELSGLQGITDAGFLPLLESSKAGLVKVNLSGCINLTDTVVLSMVKSHGWTLEVLNLDGCIKVSDASLMAMAGNCPLLCDLDLSKCTITDTGIAALARGKQLNLEVLSLSGCTMVSDKSMSSLKKLGHTLVGLNIKRCNAISSRSIDRLTEHLWMCDILS* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1260 646 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 637 - -
Apr5g1260 646 Gene3D - 61 112 - -
Apr5g1260 646 Gene3D Ribonuclease Inhibitor 449 646 IPR032675 -
Apr5g1260 646 Gene3D Ribonuclease Inhibitor 146 241 IPR032675 -
Apr5g1260 646 PANTHER UNCHARACTERIZED 16 637 - -
Apr5g1260 646 Gene3D Ribonuclease Inhibitor 242 448 IPR032675 -
Apr5g1260 646 Pfam F-box domain 68 106 IPR001810 GO:0005515
Apr5g1260 646 Pfam Leucine Rich repeat 242 265 IPR001611 GO:0005515
Apr5g1260 646 Pfam Leucine Rich repeat 566 583 IPR001611 GO:0005515
Apr5g1260 646 SMART LRR_CC_2 613 638 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 191 216 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 401 426 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 561 585 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 535 560 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 243 268 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 375 400 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 481 506 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 217 242 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 587 612 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 349 374 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 455 480 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 269 294 IPR006553 -
Apr5g1260 646 SMART LRR_CC_2 508 533 IPR006553 -
Apr5g1260 646 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Apr5g1260 646 SUPERFAMILY RNI-like 176 418 - -
Apr5g1260 646 SMART fbox_2 70 111 IPR001810 GO:0005515
Apr5g1260 646 SUPERFAMILY RNI-like 310 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1260 Apr-Chr5 16960477 16964348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1260 K14515 - gmx:100805418 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0175 9 2280810 2284602 Apr5g1260 5 16960477 16964348 PCT