Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0068 ATGTCTTCTTTTCTTCCTGCCACAACAGAGTCAATTGCTCTAGCATTGGAGGCCAAAGACCCATCTGAGGCCATCTTGATTCTTTATCGAGTACTTCAAGACCCTTCGTCTTCTCCAGAAGCTCTGCGCATGAAAGAGCAGGCCATTACAAACCTAACTGACCTTCTGAGGCAAGAAAATAAGTCAGAGGACCTGTGCAGTCTTCTTACTCAGTTGAGGCCCTTCTTTTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTAAGAGGAATAATTGATTCTGTTTCTAAAATACCAGGGACTTCTGATCTACAAATTGCACTGTGCAAAGAAATGGTGCAATGGACTCGTGCTGAAAAGCGTACCTTTTTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTCATGGAAAATAAGGAGTATTCTGAAGCTTTGACTCTCCTTAATAGCTTGGTCAAGGAAGTTAGAAGATTAGATGACAAGCTTCTACTTGTAGACATAGACTTGCTTGAAAGCAAGTTGCACTTCTCTTTAAGAAACCTTCCCAAGGCAAAAGCTGCCCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCTCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATTCTTCATGCTGAGGAGAAGGATTATAAAACTGCATATAGTTATTTCTTTGAAGCATTTGAGTCTTTCAATGCTCTTGAAGAACCCAAGGCTGTCTTCAGCCTCAAATACATGTTATTGTGCAAGATCATGGTGAGCCAAGCTGATGATGTGGCTGGAATTATATCTTCTAAAGCTGGCCTCCAATATGTTGGGCCTGACTTGGATGCCATGAAAGCTGTCGCCGATGCTCATGCTAAGCGATCGTTGAAGTTATTTGAAATTGCTTTGCGTGATTACAAGGCCCAGTTGGAGGAAGATCCAATTGTTCACAGGCACCTGTCATCCCTGTATGATACACTCCTGGAGCAGAATCTTTGCAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACATATTGCTGAACTAATCGGACTTCCCGTAGATCACGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGATGATCCCAAGACTGATGCAATATACCCTGCAACTTTAGAAACCATTTCTAATATTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1266 0.4313 MSSFLPATTESIALALEAKDPSEAILILYRVLQDPSSSPEALRMKEQAITNLTDLLRQENKSEDLCSLLTQLRPFFSLIPKAKTAKIVRGIIDSVSKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLNSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEEPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHAKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0068 421 PANTHER - 2 421 - -
Apr9g0068 421 Gene3D - 45 420 - -
Apr9g0068 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 421 - -
Apr9g0068 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 395 IPR036390 -
Apr9g0068 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 - -
Apr9g0068 421 SMART PINT_4 319 402 IPR000717 -
Apr9g0068 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Apr9g0068 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Apr9g0068 421 Pfam PCI domain 284 385 IPR000717 -
Apr9g0068 421 Coils Coil 125 145 - -
Apr9g0068 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 15 127 IPR040773 -
Apr9g0068 421 SUPERFAMILY TPR-like 128 322 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0068 Apr-Chr9 892574 895915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0068 K03036 - gmx:100796188 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1155 5 16092786 16096860 Apr9g0068 9 892574 895915 PCT