Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1155 ATGATGTCTTCCTCCATACCAGAATTGCTTAGCAGCTTCAGTCTGATAGCACTTAGGTTTCCATTTATTATAATTAAATGGTGTCTGCTAAACAAAAATGGCATGCTTTTGCTTATGTTGGCCAATGAGATTGTGATACCAAGAGGAGTTTTCAAAACAGGAACCATGTCTTCGTCTTATCTTCCTGCTACAACTGAGTCACTTGCTTTGGCAATGGAGGCCAAAGACCCATCTGAGGCCATCTCTATTCTTTATAGTGTACTTGATGATCCTTCATCATCCCCAGAAGCTCTGCGCATGAAGGAACAAGCCATCACAAACCTCACTGACCTTCTCAGGCAAGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTTTTCTCCTTGATACCTAAAGCAAAAACCGCTAAGATTGTCAGAGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTGTGGACTCGTGCTGAAAAACGTACCTTTCTGAGACAGAGAGTTGAGGCAAGGCTTGCTGCGCTTCTGATGGAAAATAAGGAGTATTCAGAAGCATTGACTCTTCTTTCAGGCTTGGTCAAAGAGGTTAGAAGATTAGATGATAAGCTTCTTCTTGTAGACATAGACTTACTGGAAAGCAAGCTACACTTCTCATTGAGAAACCTTCCAAAGGCAAAGGCTGCCCTCACGGCTGCAAGAACAGCTGCAAATGCCATTTATGTGCCTCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATTCTTCATGCTGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTTGAATCTTTCAATGCACTTGAAGATCCCAAGGCTGTTTTTAGCCTGAAATATATGTTATTGTGTAAGATCATGGTGAGTCAAGCTGACGACGTTGGTGGAATTATTTCTTCTAAAGCAGGCCTGCAATATGTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCTGACGCACACTCTAAGCGGTCCCTCAAGTTGTTTGAAATTGCTTTGCGGGACTATAAGGCCCAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCTCTGTATGATACCCTTCTGGAACAGAATCTTTGCAGATTGATTGAGCCTTTCTCAAGGGTTGAGATTTCACATATTGCTGAGCTTATTGAACTTCCCATTGATCACGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTCGTCATATTTGACGATCCCAAGACTGATGCAATATATCCTGCAACTTTAGAGACCATTTCCAACATTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1434 0.431 MMSSSIPELLSSFSLIALRFPFIIIKWCLLNKNGMLLLMLANEIVIPRGVFKTGTMSSSYLPATTESLALAMEAKDPSEAISILYSVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEISHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1155 477 SUPERFAMILY "Winged helix" DNA-binding domain 369 451 IPR036390 -
Apr5g1155 477 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 56 477 - -
Apr5g1155 477 SUPERFAMILY TPR-like 186 378 IPR011990 GO:0005515
Apr5g1155 477 Gene3D - 101 476 - -
Apr5g1155 477 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 448 473 IPR040780 -
Apr5g1155 477 Pfam PCI domain 340 441 IPR000717 -
Apr5g1155 477 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 71 183 IPR040773 -
Apr5g1155 477 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 375 458 - -
Apr5g1155 477 PANTHER - 56 477 - -
Apr5g1155 477 Coils Coil 181 201 - -
Apr5g1155 477 ProSiteProfiles PCI domain profile. 278 446 IPR000717 -
Apr5g1155 477 SMART PINT_4 375 458 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1155 Apr-Chr5 16092786 16096860 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1155 K03036 - gmx:100796188 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1155 5 16092786 16096860 Apr9g0068 9 892574 895915 PCT