Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0046 ATGGCGACCCTCTCGCTGGACGAGGAAACGTCGAAGAAAGTCATACGACAGGTGGAGTTCTACTTCAGCGATAGCAACCTTCCCAGAGACAATTTTTTAAAGAAAACCGTCACTGAAAGCCAAGATGGCATGGTTAGTTTGGCTTTGATTTGCTCTTTCAATCGGATGCGACAGCATCTTAATTTGGGGGATGTTAAGCCTGCTGAGGTAACAGAAGACACTGTTAAAGCTGTTGCTCAAGCTTTGAGAAACTCGGCCTCGCTTAAAATCTCGCAAGATGGTAACAAAGTTGGCCGGGCAACTGAACTTCCAAAGCCAGAAGAAGTGATTGAGCAGGTAGAGATCAGAACAATTGCTGCATCACCATTTGAATATAGTGTGAAGCTTGAAGACGTCGAAACATTTTTTGGTCAATATGGCAAGGTTAACAGTGTTCGATTGCCTCGCCATGTTGGAGACAAAAGGTTCTTTTGTGGTACTGCCCTTGTTGAGTTCGCAACAGATGAAGAAGTGGAAAAAGTTTTGAAGCAAAGACTAGTCTACGCAGGGGCTGAGTTGGAATTAAAGCCAAAGAAGGACTTTGATGCAGAGAGAGAAAAAGAATTAGAAGAGCATGAAAAATCTCGTTTATCAGGTGGTTCAGATCACCAATGTAACACAAATACAGAATCAAACTACCCTAAAGGCTTACTCATAGCCTTCAAACTAAAGGGTGTTTCAGATAAAGTTCCTTCAGAACAAAATAACACTGATCAACAAACCAATGACAATAATGCTGAAAGTGATCAAAAGATATCAGAATCTGAAAATGTTGACAATGATAAAGAAAACAATGAGGTGAGTGAAGGAAAGGAGACTGAAAGGGAAGATAAGTGTAAAGAAACTGATGGAAAAATTTCAGCTGCTGCTTACAAGGACAACAAGGATGTTGTCTTACGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTAATGTGAAGTTCATTGATTTCAAGATTGGAGATGAGTCAGGATACATTCGCTTTGAAGAACCTGAAGCTGCCCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAAAACGGGGGCATAGTTGTGAAGAATTATATAGCGACTCTAGATCCCGTGACTGGTGAGGCTGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGAAAAGCGCCGAGAATCTTTCAATAACCGAGGAAGGGGAGGAAAGCATGGTAGAGGGGGCAGACATAGCCGCTCTAGAGAGAATGAATCTGCAGGAGGTCGCCCACATAAAGTGAGAAAGTATTAA 1299 0.4234 MATLSLDEETSKKVIRQVEFYFSDSNLPRDNFLKKTVTESQDGMVSLALICSFNRMRQHLNLGDVKPAEVTEDTVKAVAQALRNSASLKISQDGNKVGRATELPKPEEVIEQVEIRTIAASPFEYSVKLEDVETFFGQYGKVNSVRLPRHVGDKRFFCGTALVEFATDEEVEKVLKQRLVYAGAELELKPKKDFDAEREKELEEHEKSRLSGGSDHQCNTNTESNYPKGLLIAFKLKGVSDKVPSEQNNTDQQTNDNNAESDQKISESENVDNDKENNEVSEGKETEREDKCKETDGKISAAAYKDNKDVVLREDLKGVFEKFGNVKFIDFKIGDESGYIRFEEPEAAQKARAAAVLSENGGIVVKNYIATLDPVTGEAEREYWSLLRGNQEKRRESFNNRGRGGKHGRGGRHSRSRENESAGGRPHKVRKY* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0046 432 MobiDBLite consensus disorder prediction 394 432 - -
Apr9g0046 432 MobiDBLite consensus disorder prediction 195 222 - -
Apr9g0046 432 PANTHER LUPUS LA PROTEIN-RELATED 2 431 IPR045180 -
Apr9g0046 432 MobiDBLite consensus disorder prediction 242 261 - -
Apr9g0046 432 MobiDBLite consensus disorder prediction 195 212 - -
Apr9g0046 432 MobiDBLite consensus disorder prediction 242 295 - -
Apr9g0046 432 CDD LA_like_plant 10 99 - -
Apr9g0046 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Apr9g0046 432 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Apr9g0046 432 ProSiteProfiles xRRM domain profile. 293 420 IPR014886 GO:0003723
Apr9g0046 432 SMART rrm1_1 302 373 IPR000504 GO:0003723
Apr9g0046 432 SMART rrm1_1 117 189 IPR000504 GO:0003723
Apr9g0046 432 SUPERFAMILY RNA-binding domain, RBD 313 400 IPR035979 GO:0003676
Apr9g0046 432 Gene3D - 109 208 IPR012677 -
Apr9g0046 432 Pfam La domain 14 84 IPR006630 -
Apr9g0046 432 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Apr9g0046 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Apr9g0046 432 MobiDBLite consensus disorder prediction 262 295 - -
Apr9g0046 432 PANTHER BNAANNG34180D PROTEIN 2 431 - -
Apr9g0046 432 Pfam RNA binding motif 307 403 IPR014886 GO:0003723
Apr9g0046 432 Gene3D - 2 104 IPR036388 -
Apr9g0046 432 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Apr9g0046 432 Gene3D - 280 403 IPR012677 -
Apr9g0046 432 SMART la 8 100 IPR006630 -
Apr9g0046 432 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr9g0046 432 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr9g0046 432 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr9g0046 432 CDD RRM1_La 117 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0046 Apr-Chr9 620445 625820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0046 K11090 - gmx:100792984 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0046 9 620445 625820 Apr9g0046 9 620445 625820 ECH
Apr9g0046 9 620445 625820 Apr5g1131 5 15899635 15903253 PCT