Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1131 ATGGCGACACTGTTGGACGAAGCAACCGCTAAAAATGTTATAAGACAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCATGGATAGTTTTATGAGGAAAACTGTCACTGAAAGCAAAGATGGAATGGTTAGTTTAGCGTTGATTTGTTCCTTTAATCGAATGAGAAAGCACCTTAATTTGGGTGATGTTAAGGCCGATGAAGTGGCCCGAGATACTGTTAATGCTGTTGCTCAAGCTTTGAGAAATTCGGCTTCACTCAAGGTTTCCGAAGATGGGGAAAAAGTTGGCAGGACAACTGAACTTCCAAAGCCAGAACAGGTAATTGAGCAGGTAGAGATAAGAACACTAGCTGCATCACCATTTGAATATGACCTGAAACTTGAAGATGTGGAGAAGTTCTTTGGTCACTATGCCAAGGTTAATAGTGTCCGGCTTCCTCGTCATGTTGGAGACAAAAAGTTTTTCTGCGGCACAGCCCTTGTTGAATTCTCATCAGAGGAAGAAGTAGAAAAAGTCATGAAGGAAAAACTGGTCTATGCTGGGGCTGCGTTAGAATTAACACCAAAGAAGGACTTCAATGCAGAGAGAGAAAAAGAATTAGAAGATTATGAAAAATCTCGTCCACCTGGCAGTTCAAATCAACAGAATTACTTAAATGCAGAAGAAAACTATCCTAAAGGATTAATTATTGCCTTCAAACTAAAGAGCATTTCTGATGAAGTTCCTTCAGAACGAAATGGGGTTGATCAACAAACCAATGGCAATAGTGTTGTCCCCAAAACAGATGAGAAAAATCCCTCTGAAATTATTTCTGGGGAAAGTGACCAAAAGGTATCAGAAAATGTTGACAATGATGAAGAAAACAATGTGATGAAAGAAGGAAAGAAAACTGAAGGTGAAGGAAAGAGTCAAGAAGCTGATAAAAAGTTTTCAGCCGCTGCTTACAAGAACAACATGGATGTTGTCTTGCGTGAGGATTTGAAGGATGTCTTTGAGAAGTTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCTGAGTCAGGATACATCCGATTTGAAGAAACTAAATCTGTTCAGAAAGCTCGTGCTGCTGCAGTTCTTTCAGTAAAGGGTGGCTTGGTTGTAAAGAATTATGTTGCTACTCTAGATCCAGTGACTGGTGAGGCTGAAAAAGAATATTGGTGCCGGCTTCGTGGTAATCAAGACAAGCATCGAGAATATAAAAGTAATCAGGGAAGGGGAGGAAGGCATGGTAGAGGTGGCAAACATGCACGCTCTAGAGAGAATGAACGTGGAGAGAATCGCCCCAATAAAGCTCAGAAAGTTGGTGCTGCTTAA 1344 0.4085 MATLLDEATAKNVIRQVEFYFSDSNLPMDSFMRKTVTESKDGMVSLALICSFNRMRKHLNLGDVKADEVARDTVNAVAQALRNSASLKVSEDGEKVGRTTELPKPEQVIEQVEIRTLAASPFEYDLKLEDVEKFFGHYAKVNSVRLPRHVGDKKFFCGTALVEFSSEEEVEKVMKEKLVYAGAALELTPKKDFNAEREKELEDYEKSRPPGSSNQQNYLNAEENYPKGLIIAFKLKSISDEVPSERNGVDQQTNGNSVVPKTDEKNPSEIISGESDQKVSENVDNDEENNVMKEGKKTEGEGKSQEADKKFSAAAYKNNMDVVLREDLKDVFEKFGTVKYIDFKIGAESGYIRFEETKSVQKARAAAVLSVKGGLVVKNYVATLDPVTGEAEKEYWCRLRGNQDKHREYKSNQGRGGRHGRGGKHARSRENERGENRPNKAQKVGAA* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1131 447 ProSiteProfiles xRRM domain profile. 302 432 IPR014886 GO:0003723
Apr5g1131 447 SUPERFAMILY RNA-binding domain, RBD 325 409 IPR035979 GO:0003676
Apr5g1131 447 MobiDBLite consensus disorder prediction 194 218 - -
Apr5g1131 447 ProSiteProfiles La-type HTH domain profile. 3 106 IPR006630 -
Apr5g1131 447 Gene3D - 310 415 IPR012677 -
Apr5g1131 447 PANTHER LUPUS LA PROTEIN-RELATED 5 447 IPR045180 -
Apr5g1131 447 PANTHER OS02G0610400 PROTEIN 5 447 - -
Apr5g1131 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 176 IPR000504 GO:0003723
Apr5g1131 447 MobiDBLite consensus disorder prediction 243 306 - -
Apr5g1131 447 Gene3D - 108 205 IPR012677 -
Apr5g1131 447 CDD RRM2_La_like 321 384 - -
Apr5g1131 447 SMART rrm1_1 116 188 IPR000504 GO:0003723
Apr5g1131 447 SMART rrm1_1 314 378 IPR000504 GO:0003723
Apr5g1131 447 Pfam RNA binding motif 323 415 IPR014886 GO:0003723
Apr5g1131 447 Pfam La domain 13 83 IPR006630 -
Apr5g1131 447 Gene3D - 2 103 IPR036388 -
Apr5g1131 447 MobiDBLite consensus disorder prediction 279 306 - -
Apr5g1131 447 PRINTS Lupus La protein signature 16 33 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr5g1131 447 PRINTS Lupus La protein signature 42 57 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr5g1131 447 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr5g1131 447 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Apr5g1131 447 CDD LA_like_plant 9 98 - -
Apr5g1131 447 SMART la 7 99 IPR006630 -
Apr5g1131 447 MobiDBLite consensus disorder prediction 404 447 - -
Apr5g1131 447 MobiDBLite consensus disorder prediction 244 263 - -
Apr5g1131 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Apr5g1131 447 MobiDBLite consensus disorder prediction 425 439 - -
Apr5g1131 447 SUPERFAMILY RNA-binding domain, RBD 107 183 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1131 Apr-Chr5 15899635 15903253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1131 K11090 - gmx:100786016 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1131 5 15899635 15903253 Apr5g1131 5 15899635 15903253 ECH
Apr9g0046 9 620445 625820 Apr5g1131 5 15899635 15903253 PCT