Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2159 ATGAAGCCGTGTCCAAGACTAAAAAATTCCGATGTCATTGGTGTGATATCCGTAATTGTAATATTGGGATCACTAGGAGTGAGGGTAGCAGAATGCAGAGTAGCCAGTGGATTGGGAAACCTTGAATACACTGCCATCAATTGCCGAAAGCATAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCAAAACAAGCAACACCAAGGCCTTTCGATCTGCAATAAGCAAACTCAGCCAGTATGCCTCAGATGGGGGTTCACAACTTGTTGTGCCACCTGGGAAATGGCTAACTGGACCCTTCAATCTCACAAGCCATTTCACTCTTTTTCTCCATAAGGATGCTGTTCTTCTTGCATCTCAGGAAGAATCAGAATGGCCCCAACTTCCTGTACTACCATCTTATGGAAGAGGAAGAGATGCTCCTGATGGAAGGTTTGGTAGTCTAATTTTTGGAACCAACCTCACCGATGTTGTAATTACAGGTCACAATGGAACAATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAAGGAACTGAAACTCACCAGGCCGTACATGATTGAAATCATGTACTCTGATCAAATCCAGATATCAAATCTCACTTTGATAAACTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATAATACAAGGGCTTACCATTCTTGCACCAGTCGACTCTCCCAACACAGATGGGATAGACCCAGATTCATGTACAAACACAAGAATTGAAGACTCCTTCATTGTCTCCGGTGATGATTGTGTTGCAGTAAAAAGTGGTTGGGATCAGTACGGAATTAAATTTGGAAAACCAACCCAACACTTAATCATCAGAAGGCTTACTTGTATATCCCCTGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATTCAAGACGTTAGAGCTGAAGATATTACAGCTGTCAACACTCAATCAGCTGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAAGACATTTTTGTGAAGGGAATGAACCTAAACACCATGAAATATGTATTTTGGATGACAGGTGCTTACGGATCACACCCTGACCCTGGTTTTGATCCCAAAGCACTTCCTAACATTACAGGAATAAACTATAGAGACGTTGATGCAAAGAATGTGACATATTCAGCAAGGCTTGATGGAATTTCTAATGACCCTTTTACAGGAATCTGCATTTCCAATGTGACTATCGAAGTGAGTGAAGAGAAAAAGAAGCCTCAATGGAATTGCACTGATGTTGCTGGAGTTACAAGCAATGTCATACCTAAGCCTTGTGAATTGTTGCCACAAAAGGAAGAGAAATTCGACTGTTCTTTTCCAACTGACAAACTGCCCATTGAAAATGTTCAGTTGAAGACTTGTTCCTTTAGAAGGGTCTACTTCTAA 1437 0.4154 MKPCPRLKNSDVIGVISVIVILGSLGVRVAECRVASGLGNLEYTAINCRKHSAVLTDFGGVGDGKTSNTKAFRSAISKLSQYASDGGSQLVVPPGKWLTGPFNLTSHFTLFLHKDAVLLASQEESEWPQLPVLPSYGRGRDAPDGRFGSLIFGTNLTDVVITGHNGTIDGQGSYWWDKFHKKELKLTRPYMIEIMYSDQIQISNLTLINSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGIDPDSCTNTRIEDSFIVSGDDCVAVKSGWDQYGIKFGKPTQHLIIRRLTCISPDSAMIALGSEMSGGIQDVRAEDITAVNTQSAVRIKTAVGRGAYVKDIFVKGMNLNTMKYVFWMTGAYGSHPDPGFDPKALPNITGINYRDVDAKNVTYSARLDGISNDPFTGICISNVTIEVSEEKKKPQWNCTDVAGVTSNVIPKPCELLPQKEEKFDCSFPTDKLPIENVQLKTCSFRRVYF* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2159 478 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 472 - -
Apr8g2159 478 PANTHER PECTIN LYASE-RELATED 16 472 - -
Apr8g2159 478 SUPERFAMILY Pectin lyase-like 46 473 IPR011050 -
Apr8g2159 478 Gene3D - 41 438 IPR012334 -
Apr8g2159 478 Pfam Glycosyl hydrolases family 28 148 431 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2159 Apr-Chr8 32164198 32166423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2159 11 474 Glycoside Hydrolase AT3G61490 67.161 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2159 - - gmx:100779166 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0653 6 9528911 9532237 Apr8g2159 8 32164198 32166423 PCT