Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0653 ATGAAGCCGTGTCCAAAACTCAGTAACTCCTATGTTTTTGGGGTTATCATAACAGTTTTGTTATTGGGATTACAAGGATTGAGGGTTGCTGAATCCAGAGTATTTGGTAGATTGGATGAGCTTGAGTACCCAGCTATCAGTTGCAGGAAACACACTGCGGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATGTAACACCAAGGCCTTTCAATATGCAATAAGCAATCTGAGTCATTATGCACATGATGGGGGAGCCTTACTTGTTGTTCCACCAGGGAAATGGCTAACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTTCTCCAAAAAGGAGCTACCATTCTTGCATCCCAGGATGAATCAGAGTGGCCTACACTTGCTGTGCTACCGTCATATGGAAGAGGAAGGGATGCTCCTGATGGAAGGTTCAGTAGTCTAATTTTTGGAACAAACCTCACTGATGTTATAATCACTGGTTTCAATGGGACAATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGGATGAATTGAAACTCACAAGGCCATACATGATTGAGATTATGTTCTCTGATCAAATTCAGATATCAAATCTCACATTGATCAATTCCCCATCTTGGTTTGTCCATCCAATTTATAGCAGTAATATTGTAATTCAAGGGTTGACCATTATCGCACCAGTTGACTCTCCCAACACAGATGGAATAGACCCAGATTCTTGTACCAACATTAGAATTGAAGATTGTTATATTGTATCTGGAGATGATTGTGTTGCTGTAAAAAGTGGTTGGGATGAGTATGGAATCAAATTTGGAATGCCAAGCAAACACATAATAATTAAAAGGCTTGAATGTGTATCCCCTGATAGTGCTATGATTGCATTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGACCTCACAGCAATCAATACTGAATCGGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTTAAAGACATATTTGTTAAAGGAATGAACTTGAACACAATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACCCTGACTTTGATCCCAAAGCACTTCCCAACATTACAGGAATAAATTATAGAGATGTGATTGCAGAAAATGTCACTTATTCAGCAAGACTTGACGGAATTCCTAATGACCCTTTTACAGGAATCTGTATTTCTAACGTGACTATCCATAGTGGGGCAAAGGCAAAGAAATTGCAATGGAATTGCACCAATGTTGAAGGGCTTACAGGTGATGTCTATCCTAAGCCTTGTGAATTGTTGCCACAGAAGGAAGAGAAAATTGAGTGTCCTTATCCAGATGAGGAATTGCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTATTAAATTCTTCTGA 1434 0.3989 MKPCPKLSNSYVFGVIITVLLLGLQGLRVAESRVFGRLDELEYPAISCRKHTAVLTDFGGVGDGKTCNTKAFQYAISNLSHYAHDGGALLVVPPGKWLTGSFNLTSHFTLFLQKGATILASQDESEWPTLAVLPSYGRGRDAPDGRFSSLIFGTNLTDVIITGFNGTIDGQGSYWWDKFHKDELKLTRPYMIEIMFSDQIQISNLTLINSPSWFVHPIYSSNIVIQGLTIIAPVDSPNTDGIDPDSCTNIRIEDCYIVSGDDCVAVKSGWDEYGIKFGMPSKHIIIKRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTESAVRIKTAVGRGAYVKDIFVKGMNLNTMKYVFWMTGSYGSHPDPDFDPKALPNITGINYRDVIAENVTYSARLDGIPNDPFTGICISNVTIHSGAKAKKLQWNCTNVEGLTGDVYPKPCELLPQKEEKIECPYPDEELPIESVQLKTCSFIKFF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0653 477 Gene3D - 39 436 IPR012334 -
Apr6g0653 477 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 472 - -
Apr6g0653 477 SUPERFAMILY Pectin lyase-like 45 472 IPR011050 -
Apr6g0653 477 SMART pbh1 220 246 IPR006626 -
Apr6g0653 477 SMART pbh1 247 268 IPR006626 -
Apr6g0653 477 Pfam Glycosyl hydrolases family 28 150 431 IPR000743 GO:0004650|GO:0005975
Apr6g0653 477 PANTHER PECTIN LYASE-RELATED 16 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0653 Apr-Chr6 9528911 9532237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0653 40 471 Glycoside Hydrolase AT3G48950 69.954 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0653 - - gmx:100785005 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0653 6 9528911 9532237 Apr6g0653 6 9528911 9532237 ECH
Apr6g0653 6 9528911 9532237 Apr8g2159 8 32164198 32166423 PCT