Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1645 ATGTCTCGGTTCTTTTCCGCATGGAACAAGAAGAAATTTCACCTCAACTTGATACCCACACTTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACACACCCACTTGAAGAACCACTTCCACCACAACATCAATGGCCATGGTCAATGGAGACTACGTCTATATAGTAGTGGTAGCAATGGGGAACCACCAGAGGATTGGGCTCATACTGTACCTCCTAATGCTATGCATACTGTTAATGTTATTCGGGCTTCTGGGCCCCCAGATGCGAACACTGCCTGGGTAGGGGGTTCCCATTTGGGTAGGGATTTGCCAACTCCAAAGCAAATTTGCAAGGGTCTTGACAAGTTTGTTATTGGCCAACACAGGGCCAAAAAGGTGCTATCTGTGGCTGTTTATAATCACTATAAAAGAATATACCACGCCTCTTTACTGAAAGGGTCAGGGGAAGAAGATACAGGAATTTCTGAAGGATTTGATGATGATGATCATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACGGGCTCAGGGAAGACATTACTTGCAAAAACACTAGCACGTTTTGTGAATGTCCCGTTTGTCATTGCTGATGCTACTACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTGTTAAAAATGCTTGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAACATTCTTTTTATATGTGGTGGAGCATTTGTTGATCTTGAAAATACCATTTCAGAGAGACGGCAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGGAGTAACAAATGCTGCAGTCACATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATAGGACGATTTCCAATCTTAATTAGCTTGTCAGCTCTTACTGAGGATCAACTTATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCCAAGCAGTACAAGAAATTATTTACTATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTGTAAGATTAATCGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTCTAAGAGCCCTACTGGAAGGCATTTTAACTGAAGCCATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAACTGATTGATGCAGTTGTTGTTGACGAAGAGTCAGTAGGATCAGTAAATGCCCCTGGGTGTGGAGGAAAAATTCTTTGTGGAGATGGTGCTTTAGAGCTGTACCTAGCTAAGACGGAGAGTTCAGTGGTAAATGGTCACATACCTGAACCGGACTTGCAAGAGGGGGAACCAGAGATTTCATCAAGAGTCGTGAGCATGTAA 1581 0.4231 MSRFFSAWNKKKFHLNLIPTLISSSSSSSSSSSSSHTHLKNHFHHNINGHGQWRLRLYSSGSNGEPPEDWAHTVPPNAMHTVNVIRASGPPDANTAWVGGSHLGRDLPTPKQICKGLDKFVIGQHRAKKVLSVAVYNHYKRIYHASLLKGSGEEDTGISEGFDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLENTISERRQDSSIGFGAPVRANMRTGGVTNAAVTSSLLESVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFTMNNVKLHFTEKAVRLIAKKAMAKNTGARGLRALLEGILTEAMFEIPDVKAGNELIDAVVVDEESVGSVNAPGCGGKILCGDGALELYLAKTESSVVNGHIPEPDLQEGEPEISSRVVSM* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1645 526 MobiDBLite consensus disorder prediction 24 45 - -
Apr8g1645 526 PANTHER OS01G0886600 PROTEIN 94 503 - -
Apr8g1645 526 Pfam C-terminal, D2-small domain, of ClpB protein 382 452 IPR019489 -
Apr8g1645 526 SMART ClpB_D2_small_2 382 475 IPR019489 -
Apr8g1645 526 SMART AAA_5 171 329 IPR003593 -
Apr8g1645 526 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 105 472 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Apr8g1645 526 CDD AAA 172 283 - -
Apr8g1645 526 Pfam AAA domain (Cdc48 subfamily) 171 375 IPR003959 GO:0005524|GO:0016887
Apr8g1645 526 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 94 503 - -
Apr8g1645 526 Gene3D - 381 481 - -
Apr8g1645 526 Gene3D - 102 380 IPR027417 -
Apr8g1645 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 468 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1645 Apr-Chr8 26618281 26628000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1645 175 274 Miscellaneous Gene Families AT3G02450 36.634 1.39e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1645 K03544 - gmx:100818418 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1645 8 26618281 26628000 Apr8g1645 8 26618281 26628000 ECH
Apr6g0820 6 12682722 12690518 Apr8g1645 8 26618281 26628000 PCT