Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0820 ATGTCTCGAATCTTCTCTAGATGGAAGAAAGCGTCACTTGCGGGGTCCCACGCGCCTGTCACGCGTGGGAATCGAACCGGGTTCAGTTCCCGGCTCAATCGGGCATGCCCAATCTCGACCCACTTGAACCAGATGGTCGCCGGTGGCGCCGCCCATCGCCGCCGTGAGGCGCTGGTGGGGGTTCAGGAACGGTACAAGTGGGACCGTGGCGGGTCAGATGACAATCTGACCCGGAAGATTCGGGCAGAGGCTAATTGCCCACGTTGTACCAAAGACATGAACATTGTTTTCTCCAATCGCCACTTTCCAACCACAAATGATGTTTCTCCTGATTTGGGTTCAGGTGGTGAAAAGGGTTACCAAGCGGTTAACCTTTGTCCAAGTTGCAAAACTGCTTATTATTTTAGGCCTTATGACACTGCACCTTTGCAAGGTACCTTTGTGGAGATTGGTAGAGTAACTACTAACAATAATAACAATAATAATAATGTTATTAGTAGTGTTAATGGTAAGTCTCAGTCTCCTAGGAGGATCACGCATGGGAAAGGTGGTGGCAAAGAGGGTGGTGGTAATAGTAGTAGTAAGAATAGTAATGTGGGAGAGGAATTTGGTAATAAGAGTGATGCAAGTAAATGGCTTGAAGTTTCATTGTGGGAGACGTTGATGTCTTACAATGGTGGTGCTAGTGGTAATGGTAATAATGGGGAGCCACCTGAGTCATGGCCTCCATCACCAGGTGGTAATAATAATGGGAATGGTTTGGCTGTGCATACTCCACCGGGACCACCTTTTGCGCCGGGGATTAATGTTATCCGGGCTTCAGGGCCACGGGATGGCGGTTCAGGTGGTGCAGGTGGGGGAAATGGAGAGAAGACCACGTGGGGAGGGTCTAATTTGGGGAATGATTTGCCCTCACCGAAGGAGATCTGCAAAGGTCTCGACAAGTTTGTTATTGGCCAGGAGAGAGCCAAGAAGGTCCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCTACTATACCAAAAGGGTCAGGCGCAGATTCAGAAGCTTCAGAAGTAGTAGATGATGACGAAAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGCCCAACAGGGTCAGGGAAGACATTACTTGCAAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCGATCCTATATAAACTACTTGCGGCTGCAGATTTCAATGTTGCAGCAGCTCAGCAAGGAATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATCAGCCGGGATGTTTCTGGAGAGGGTGTTCAGCAGGCATTATTGAAAATGCTGGAAGGAACTATAGTAAACGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAGTTGGACACAAAAAATATTCTTTTTATATGCGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGCCGTAACAGATTCTGTAGTTACTTCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCGTATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACCGAAGACCAACTTATGATGGTTAAGTTACACTTCACAGAGAAAGCTCTAAGATTGATAGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAAGCATTTTAACTGAAGCCATGTTTGAGATTCCTGATATCAAGATAGGAAGTGACCGAGTTGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAACTGACCCTGGATCTGGAGGGAAAATTCTTCGCGGAGATGGTGCTTTCGAGAATTACCTAGCTAAGGCTAATGATGTAGCTGAATCAGATTTACAAGAGGGGGATTCAGAACTTTCCTCAAGAGCCATGAGCATGTGA 2085 0.4547 MSRIFSRWKKASLAGSHAPVTRGNRTGFSSRLNRACPISTHLNQMVAGGAAHRRREALVGVQERYKWDRGGSDDNLTRKIRAEANCPRCTKDMNIVFSNRHFPTTNDVSPDLGSGGEKGYQAVNLCPSCKTAYYFRPYDTAPLQGTFVEIGRVTTNNNNNNNNVISSVNGKSQSPRRITHGKGGGKEGGGNSSSKNSNVGEEFGNKSDASKWLEVSLWETLMSYNGGASGNGNNGEPPESWPPSPGGNNNGNGLAVHTPPGPPFAPGINVIRASGPRDGGSGGAGGGNGEKTTWGGSNLGNDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHATIPKGSGADSEASEVVDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQLDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGAVTDSVVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDIKIGSDRVDAVVVDEESVGSLTDPGSGGKILRGDGAFENYLAKANDVAESDLQEGDSELSSRAMSM* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0820 694 MobiDBLite consensus disorder prediction 155 207 - -
Apr6g0820 694 MobiDBLite consensus disorder prediction 228 300 - -
Apr6g0820 694 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 300 584 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Apr6g0820 694 SMART AAA_5 366 528 IPR003593 -
Apr6g0820 694 SMART ClpB_D2_small_2 577 649 IPR019489 -
Apr6g0820 694 MobiDBLite consensus disorder prediction 155 176 - -
Apr6g0820 694 Gene3D - 576 655 - -
Apr6g0820 694 CDD AAA 367 478 - -
Apr6g0820 694 Pfam C-terminal, D2-small domain, of ClpB protein 584 625 IPR019489 -
Apr6g0820 694 MobiDBLite consensus disorder prediction 189 204 - -
Apr6g0820 694 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 42 694 - -
Apr6g0820 694 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 42 694 - -
Apr6g0820 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 641 IPR027417 -
Apr6g0820 694 Gene3D - 297 575 IPR027417 -
Apr6g0820 694 Pfam AAA domain (Cdc48 subfamily) 366 570 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0820 Apr-Chr6 12682722 12690518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0820 370 469 Miscellaneous Gene Families AT3G02450 37.624 7.43e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0820 K03544 - gmx:100805340 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0820 6 12682722 12690518 Apr6g0820 6 12682722 12690518 ECH
Apr6g0820 6 12682722 12690518 Apr8g1645 8 26618281 26628000 PCT