Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1364 ATGTCTTCTTTGAGCAGAGAATTGGTTTTTCTCATACTCCAATTTCTGGAGGAGGAGAAATTCAAGGAGTCGGTGCACAGGCTTGAGAAAGAATCTGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAAGTTGAGAAGTACTTGTCAGGTTTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCACTTGATCGGCAAGACAAGGCGAAGGCTGTTGAGATATTAGTGGGTGACTTAAAGGTGTTCTCCACCTTCAATGAGGAGCTATACAAAGAGATAACCCAGTTGTTAACTCTTAATAATTTCAGGGAGAATGAACAGCTGTCGAAGTATGGTGACACCAAAACTGCTAGAAGCATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTTCGTGATAAGCTTCTCTTCCCTACCCTCAAGTCATCAAGACTGCGAACTTTAATCAATCAAAGTCTAAACTGGCAGCACCAGCTCTGCAAAAACCCAAGGACAAACCCAGATATAAAGACTTTATTCACAGATCACACATGTGCACCTCCTAATGGTCCTCTGGCTCCTACACCTGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCCACTGCTTATACTTCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCCGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCGGTTGTGACAGCATCAACTATACCAGTTCCACAGAATCAAGCTCCTGGGATGGTTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGACTTCGTCCTGGCCATTCGGTAGAGGAGGTTTCGTATCCCTTGGCTCGACAAGCCTCTTTGTCACTGGATGATCTGCCAAGAACGGTGACCATGACATTGCATCAAGGATCTGCCGTGACAAGCATGGATTTTCATCCTTCTCATCATACCTTGCTTCTTGTTGGTTCTAATAATGGTGAAATTACCCTCTGGGAACTAAGTTTACGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATATGTCAGCATGCTCATTGCCATTCCAGGCTGCTGCAGTTAGGGATGCCCCTATTTCTGTCAGTCGTGTCACATGGAGCCCTGATGGAAGTTTTGTTGGTATTGCTTTTACCAAACATTTGATTCACTTATATGCCTACACTGGATCAAATCCAAATGAACTAGCCCAGCGTATTGAGGTTGATGCTCATGTTGGTGGCGTAAATGACTTGGCATTTGCTCATCCAAATAAACAGCTGTGTGTCGTGACTTGTGGGGATGATAAGTCAATAAAGGTATGGGATTTAAATGGACGAAAACTATTCACATTTGAGGGACATGAGGCACCTGTATATTCTATTTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGTTATATGATAACATTGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGTACCACAATGCTTTACAGTGCTGATGGAACTAGGTTGTTTTCTTGTGGAACAAGTAAAGATGGGGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGCTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACCACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGCCAAGTGAAGTTTTGGGACATGGACAACATTAATCTTCTAACAAGCACAGATGCTGATGGTGGATTACAGGGCCTTCCACGGTTGAGATTCAATAAGGAAGGAAATATCCTTGCTGTTACTACTGTGGATAATGGATTCAAGATACTTGCTAATGCTACTGGTCTTAGATCTTTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGTCACCTATCGAATCAGCTACAATCAAGGTTTCTGGCTCTTCTACTGTTAATGTTAGTCCTGTCAACTGTAAAGTTGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGTCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAATAGATAGAGCTAAACCATGGCAACTGTCTGAAATTATAGATCCTGTCCAATGCCGGTCAGTCACCATGCCTGACAGCACAGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGCGCTGGTATTTTAGCCCTTGGTTCAAATGGTATCCAGAAACTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTACTGCCAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCGTGCATTGCACTCTCAAAAAATGACTCGTATGTTATGTCTGCCTGTGGTGGAAAGGTTTCACTATTTAACATGATGACATTCAAGGTAATGACAACATTTATGCCACCTCCTCCTGCCTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATAGCCATTGGGATGGAGGATTCATCTATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAAGGTCACCAAAATCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATATTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTGTGGAGTATTGATACATGGGAGAAAAGGAAGTCGATCCCAATACAACTACCTGCAGGAAAGTCACCTGTTGGTGATGCACGAGTACAGTTCCATACTGATCAACTTCGCTTATTGGTAGTCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAAATGGAACGCATTCGGCAGTGGGTTCCTCAAGATGTTCTGCCTGCCCCCATATCATATGCAGCTTATTCTTGTAACAGTCAGTTAATATGTGCTACATTTTGTGATGCCAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTAAGATGTCGTATTGCACCATCAATATGCTTGTCACCAGCAGCTTTAAGTGGAAGCCAAGCTGTGTATCCTCTTGTGGTTGCGGCTCATCCACTGGAACCTAACCAGTTTGCTGTTGGGTTAACTGATGGATCTGTCAAAGTGATAGAACCCACTGAATCGGAGGGAAAGTGGGGATCTTCCCCACCTTTGGACAATGGAATGTTGAATGGTAGGACAGCATCATCATCTACTACAAGCAACCACACAGCCGATCAGGCCCAACGATAA 3360 0.4295 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRTNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPTAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQAPGMVDYQNADHEQLMKRLRPGHSVEEVSYPLARQASLSLDDLPRTVTMTLHQGSAVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDMSACSLPFQAAAVRDAPISVSRVTWSPDGSFVGIAFTKHLIHLYAYTGSNPNELAQRIEVDAHVGGVNDLAFAHPNKQLCVVTCGDDKSIKVWDLNGRKLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLLTSTDADGGLQGLPRLRFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPAFEALRSPIESATIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVIDRAKPWQLSEIIDPVQCRSVTMPDSTDSSSKVVRLLYTNSGAGILALGSNGIQKLWKWARNEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKSKLKGHQNRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKSPVGDARVQFHTDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLICATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQAVYPLVVAAHPLEPNQFAVGLTDGSVKVIEPTESEGKWGSSPPLDNGMLNGRTASSSTTSNHTADQAQR* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1364 1119 ProSiteProfiles Trp-Asp (WD) repeats profile. 901 942 IPR001680 GO:0005515
Apr8g1364 1119 ProSitePatterns Trp-Asp (WD) repeats signature. 459 473 IPR019775 -
Apr8g1364 1119 SMART WD40_4 385 423 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 1039 1080 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 323 362 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 564 604 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 812 848 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 851 891 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 894 933 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 518 561 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 474 515 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 989 1025 IPR001680 GO:0005515
Apr8g1364 1119 SMART WD40_4 429 472 IPR001680 GO:0005515
Apr8g1364 1119 MobiDBLite consensus disorder prediction 1096 1119 - -
Apr8g1364 1119 Gene3D - 302 524 IPR015943 GO:0005515
Apr8g1364 1119 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 901 936 - -
Apr8g1364 1119 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 454 938 IPR011047 -
Apr8g1364 1119 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 613 IPR001680 GO:0005515
Apr8g1364 1119 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1119 IPR027728 GO:0006355
Apr8g1364 1119 SUPERFAMILY WD40 repeat-like 332 514 IPR036322 GO:0005515
Apr8g1364 1119 Pfam WD domain, G-beta repeat 438 472 IPR001680 GO:0005515
Apr8g1364 1119 Pfam WD domain, G-beta repeat 900 933 IPR001680 GO:0005515
Apr8g1364 1119 SMART ctlh 34 92 IPR006595 -
Apr8g1364 1119 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Apr8g1364 1119 SMART Lish 4 36 IPR006594 GO:0005515
Apr8g1364 1119 PANTHER PROTEIN, PUTATIVE-RELATED 1 1119 - -
Apr8g1364 1119 SUPERFAMILY WD40 repeat-like 959 1083 IPR036322 GO:0005515
Apr8g1364 1119 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 371 IPR001680 GO:0005515
Apr8g1364 1119 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 481 IPR001680 GO:0005515
Apr8g1364 1119 MobiDBLite consensus disorder prediction 1082 1119 - -
Apr8g1364 1119 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Apr8g1364 1119 Gene3D - 819 1088 IPR015943 GO:0005515
Apr8g1364 1119 Gene3D - 525 693 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1364 Apr-Chr8 20864841 20874199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1364 417 632 Miscellaneous Gene Families AT5G08390 23.982 1.23e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1364 - - gmx:100793575 2108.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1364 8 20864841 20874199 Apr8g1364 8 20864841 20874199 ECH
Apr4g0680 4 5587113 5596208 Apr8g1364 8 20864841 20874199 PCT