Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0680 ATGACTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAGTCGGTGCATAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAAGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAATACTTAACAGGGTTTACGAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTCGAAATCAGGAAGCAGAAATATCTAGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTATTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACGCAGCTGCTAACTCTTAATAATTTCAGGGAGAATGAGCAGCTGTCTAAGTATGGTGACACCAAAACTGCTCGAGGAATTATGTTGATAGAGCTAAAAAAGCTCATTGAGGCAAATCCTCTTTTCCGGGATAAACTTATCTTCCCTACTCTTAGGTCATCAAGATTGCGGACTTTAATCAATCAAAGTTTAAACTGGCAACATCAGCTTTGCAAAAATCCAAGGGCAAACCCAGATATAAAGACTTTATTCACTGACCACACATGTGCGCCTCCTAATGGTCCTCTAGCACCTACACCTGTTAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCTTATACTTCAATTGGAGCTCATGGTCCCTTTCCTCCTGCTGCAGCAACTGCTAATGCTAATGCTTTAGCTGGTTGGATGGCCAATGCCGCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTCCAACAACTCCTGGCATGGTTGATTATCAGAATGCTGATCATGAGCAGTTAATGAGAAGACTTCGGCCTGCTCCTTCTGTTGAGGAGGTTTCATATCCTGCTGCTCGACCAGCCTCTTTGTCACTGGAGGATCTACCAAGATCAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTGCTTCTTGTTGGTTCTAATAATGGTGACATTACCCTTTGGGAACTTGGGGTGCGAGACAGGTTGGTCTCGAAGCCATTCAAGATATGGGATGTCTCTGCATGCTCATTGCCATTTCAGGCAGCTATAGTCAAAGATGCACCTATTTCCGTCAGTCGTGTCACCTGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTGCACTGGATCAAATGAGCTGGCCCAGCGAATAGAGATTGATGCCCATATTGGTGGCGTTAATGACTTGGCATTTGCTCATCCAAATAAACAACTTTGTATTGTGACTTGTGGGGATGATAAATTGATAAAGGTGTGGGACTTAACTGGACGAAGACTATTCAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATACGATAATATGGGTTCTAGGGTTGACTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAACTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGGAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACGCAAAATCGTTTTTTGGCTGCTGGTGAAGATGGCCAAATCAAGTTTTGGGACATGGACAATATTAATCTTCTAACCAGCACTGATGCAGAGGGTGGACTGCAGGCCCTTCCACACTTGAGATTCAACAAGGAGGGAAATCTTCTTGCTGTTACTACTGCAGACAACGGATTCAAAATTCTTGCTAATGCTATTGGCCTTAGATCGTTAAGAACAATTGAAAATCCTGGATTTGAAGCATTGAGGTCACCCATTGAATCTGCTGCAATCAAGGCATCTGGCCCTTCTGCTGTTAATGTCAGTCCTGTCAACTGTAAAGTAGAAAGGAGTTCACCTGTCAGGCCGTCTCCCATTCTTAATGGAGTTGATCCCACTGCTCGAAATGTGGAGAAACCTAGAACTGTGGAGGATGGAATAGATAGAACTAAACCATGGCAGCTGTCTGAAATTGTGGATGCTGTCCAATGTCGGTTAGTTACCATGCCTGACAGCACAGACTCTGCCAGCAAGGTAGTCCGACTTTTATACACGAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTACAGAAGCTTTGGAAGTGGGCTCGTAGTGAACAGAATCCCACAGGCAAGGCAACTGCCAGTGTTGTCCCACAGCATTGGCAACCCAGCAGTGGTCTTCTTATGACTAATGATGTTGTGGGTGTCAACCTTGATGAAGCGGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCAGCCTGTGGTGGAAAGGTTTCGTTGTTTAACATGATGACATTCAAGGTAATGACTACATTCATGCCACCACCTCCTGCTTCTACCTTTCTGGCTTTCCATCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACCATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTAAAGGGTCATCAAAAGCGAATTACTGGTTTGGCCTTTTCAACCAATCTTAACATTCTGGTTTCGTCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCTATACAACTACCCGCAGGAAAGGCTCCCGTTGGTGACACTCGAGTGCAGTTCCATTCAGACCAAATCCGGTTACTGGTAGCCCATGAATCTCAGTTGGCAATATATGACGCCTCTAAGATGGATCGCATTCGGCAGTGGGTTCCACAAGATGTTCTACCTGCTCCCATATCATATGCATCCTATTCCTGCAACAGTCAGTTAATCTATGCTACATTTTGCGATGGCAATACTGGGGTTTTTGATGCTGATAGCTTGAGACTAAGATGTCGTATTGCACTATCTACATTCTTTTCACCGGCGGCTTTAAGTGGGAACCAAGCTGTGTATCCTGTTGTTGTTGCGGCCCATCCACTAGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAATGTGATAGAGCCCAGTGAATCGGAGGGAAAGTGGGGATCCAGTCCACCTATAGATAATGGAATATTGAACGGTAGGTCAGCATCATCATCCACAAGCAACCACACACTGGATCAGGCACAACGATAA 3387 0.4358 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCAPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFPPAAATANANALAGWMANAAASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMVDYQNADHEQLMRRLRPAPSVEEVSYPAARPASLSLEDLPRSVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGDITLWELGVRDRLVSKPFKIWDVSACSLPFQAAIVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYACTGSNELAQRIEIDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNLLAVTTADNGFKILANAIGLRSLRTIENPGFEALRSPIESAAIKASGPSAVNVSPVNCKVERSSPVRPSPILNGVDPTARNVEKPRTVEDGIDRTKPWQLSEIVDAVQCRLVTMPDSTDSASKVVRLLYTNSGAGLLALGSNGVQKLWKWARSEQNPTGKATASVVPQHWQPSSGLLMTNDVVGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKAPVGDTRVQFHSDQIRLLVAHESQLAIYDASKMDRIRQWVPQDVLPAPISYASYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTFFSPAALSGNQAVYPVVVAAHPLEPNQFAVGLTDGSVNVIEPSESEGKWGSSPPIDNGILNGRSASSSTSNHTLDQAQR* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0680 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Apr4g0680 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Apr4g0680 1128 MobiDBLite consensus disorder prediction 1090 1128 - -
Apr4g0680 1128 SMART WD40_4 999 1035 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 528 571 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 904 943 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 861 901 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 484 525 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 822 858 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 335 374 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 574 614 IPR001680 GO:0005515
Apr4g0680 1128 SMART WD40_4 441 482 IPR001680 GO:0005515
Apr4g0680 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Apr4g0680 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Apr4g0680 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 453 948 IPR011047 -
Apr4g0680 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1128 IPR027728 GO:0006355
Apr4g0680 1128 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Apr4g0680 1128 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Apr4g0680 1128 Gene3D - 828 1100 IPR015943 GO:0005515
Apr4g0680 1128 SUPERFAMILY WD40 repeat-like 342 524 IPR036322 GO:0005515
Apr4g0680 1128 Gene3D - 276 534 IPR015943 GO:0005515
Apr4g0680 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Apr4g0680 1128 MobiDBLite consensus disorder prediction 1106 1128 - -
Apr4g0680 1128 Gene3D - 559 690 IPR015943 GO:0005515
Apr4g0680 1128 SMART ctlh 34 92 IPR006595 -
Apr4g0680 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Apr4g0680 1128 PANTHER PROTEIN, PUTATIVE-RELATED 1 1128 - -
Apr4g0680 1128 SMART Lish 4 36 IPR006594 GO:0005515
Apr4g0680 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Apr4g0680 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 789 1094 IPR011047 -
Apr4g0680 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0680 Apr-Chr4 5587113 5596208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0680 447 656 Miscellaneous Gene Families AT5G08390 25.701 5.00e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0680 - - gmx:100808421 2104.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0680 4 5587113 5596208 Apr8g1364 8 20864841 20874199 PCT