Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1318 ATGGCGCGTGATTGCAGGGAGAACGATTCCGATCCAACTCTTATTGCTCTATCACATCAGCATCAGCATCAGCATCGACCACCTTATGCTGCTGGACAGACTAACACACCTTTTCCACCAGCTGGTGCCATGGTTGGATCAGAGCCTCCTTCTTTTCGACCAACACCTCCTGCTCCTCCATTGGCATCCACACCATTTCCTTCACCTGGACCTGTGGGTGGACCCGGGGTGCCCAGTTTTAGACTCATGCCACCAGGGCAGTTCAATGACCACTCAGTGCCTTCTCCTGCTTCCAATGTTGCTCCTGCTGGTGGACCTTTCCAGCGTTTTCCGATGCCACACTTTTCCTCAACTGCTCAAGCACCTCCTCTGCGTGCTCCACCCATGGGGCAACCATCAATTCAGCCTTCTGTGGGTCAAACCCCATCTTTTCCAGCTTCTCTCCAGCCTCAGCCACAGCCACCTTTTGTTCCAATGGGGTCTCCTCCATTAAGTGCTGCTCCTTCAATTTCAGGTTCCAATGTTCCCCCTCCTGTGTTTCAGCCATCTTTTCCTGGACATGCCCAGAGACAGACTGGTGCAGAAACGCAAACTGCCCCTTTTCATTTCTCTGCCCCTCCCAATCAAGGAAATTTTGGACCTGTTCCACCTGCAGCATCTTCACCTTTTCTACCTCACCAAGGAGGTTACATTCCACATCCCCCAATGGTTGCTCCGTTAGGTGTCCAGTCTATTCAACACCCCAAATCTGGACCCCCTGTAGGTGCTGTTCAGGGCTTGATAGAAGACTTCAATTCACTCTCAATCCAAACTCGTCCTGGACTCATGGAATCGTCAGTTGATGCTAAAGAATTGCCAAGGCCATTGGACGGTGATGTGGAGCCGAAGTCTTTAGCTGAGATGTATCCCATGAACTGCAATCAAAGATATCTACGACTCACAACCAGTGCATTACCTAGCTCCCAGTCTCTATGTTCAAGATGGCATCTTCCTCTTGGAGTAGTTGTATGTCCTCTTGCAGAACCTTCTGATGGGGAAGAGGTACCTGTAGTTAATTTTGCTGCAACTGGTGTCATACGTTGTAGGAGATGCCGCACATATGTGAATCCGTATGTGACATTCACGGAAGCTGGAAGAAAGTTCCGCTGCAACACCTGCTCCTTGCTTAATGATGTGCCTAGTGAATATTATGCTCAATTAGATGCCACTGGCAGAAGAGTTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACTGTAGAATTTGTTGCCCCAGCTGAATATATGGTGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATCCAGGTTGTTTCACAAACAATCAAGTCATGCTTAGATGAGCTGCCTGGCTTTCCACGAACACAAATAGGGTTTGCAACTTTTGACAGCACAGTACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAAATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCAGATGATCTCCTTGTCAACTTATCTGAGTCAAGAAGTGTGGTGGAAACCTTTCTTGATAGTCTGCCATCCCTGTTCCAGGATAACATGAATCTGGAATCTGCTTTTGGTCCTGCTCTTAAGGCTGCCTTTATGGTTATGAGTCAACTTGGAGGGAAATTATTAATTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCACTTAAAATTACGTGGAGATGATTCTCGCATTTATGGTACAGATAAAGAACATGCGTTAAGATTGCCAGAAGATCCTTTTTACAAGCAAATGGCTGCTGAATTTTCTAAATACCAGATCTCAGTGAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCATCTTTAGGAACTCTTGCAAAGTATAGTGCTGGTCAACTGTATTACTATCCAGCTTTCCAATCAGTCACTCATGGGGAGAAGCTGAGATGTGAGCTAAGAAGAGACCTTACCAGAGAAACTGCCTGGGAAGCTGTAATGCGAATTAGATGCGCAAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAGATTTATTGGCACTTCCAGCTGTTGATTGTGATAAAGCCTTTGCCATGCAGTTATCTCTTGATGAAACATTATTGACAACTCAGACAATGTATTTCCAAGTGGCATTGTTGTATACTGCATCCTGTGGAGAAAGGCGGATCAGAGTTCACACAGCAGCAGCTCCAGTAGTTACAGACTTGGTAGAGATGTACCGCCATGCTGATACTGGTGCAATGTTATCTCTGTTGAGTAGGTTAGCAATTGAGAAAACGTTGTCCCATAAGCTGGAAGAAGCACGGAGTGCTCTGCAACTAAGAATTGTGAAAGGCCTCCGAGAGTATCGAAATGTCTATCCTGTGCAGCATCGCTTGGCAAATAGAATGATATTTCCTGAGTCATTGAAGTTCCTACCCTTGTATGGATTAGCTCTTTGTAGATCAACACCTCTACGTGGAGGGTATGGGGATGTTCCGCTAGACGAACAGTGTGCAGCAGGATACACAATAATGACCCTACCAATAAAAAGGCTGTTGAAACTTCTCTATCCTAGTTTGGTTCGACTTGATGAATATCTTCTAAAGGCTGATGACTTGAAAAGCATTGATCGAAGGTTACCTTTGACTGGGGAAAGCTTGGATTCTAGGGGCTTTTATATACATGATGATGGCTTCCGATTCATTTTATGGTTTGGTAGAATGATTTCACCAAATATAGCCAATAACTTACTTGGATCAGATCATGCAGTAGAGTTATCGAAGGTTACGCTTAATGAGAATGATAATGAAGTGTCAAGGAGGCTGATGAAGGTACTTGAGAAATTTAGAAGTACTGACCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAGCCAAGAGAAGGATTTCTTCTTCTTTCAAACCTTGTTGAGGACCAGATGGGGGGTAATAGTGGGTATGCTGATTGGATGCTACAGATTTCCCGACAAGTGCAACAATAG 3072 0.4492 MARDCRENDSDPTLIALSHQHQHQHRPPYAAGQTNTPFPPAGAMVGSEPPSFRPTPPAPPLASTPFPSPGPVGGPGVPSFRLMPPGQFNDHSVPSPASNVAPAGGPFQRFPMPHFSSTAQAPPLRAPPMGQPSIQPSVGQTPSFPASLQPQPQPPFVPMGSPPLSAAPSISGSNVPPPVFQPSFPGHAQRQTGAETQTAPFHFSAPPNQGNFGPVPPAASSPFLPHQGGYIPHPPMVAPLGVQSIQHPKSGPPVGAVQGLIEDFNSLSIQTRPGLMESSVDAKELPRPLDGDVEPKSLAEMYPMNCNQRYLRLTTSALPSSQSLCSRWHLPLGVVVCPLAEPSDGEEVPVVNFAATGVIRCRRCRTYVNPYVTFTEAGRKFRCNTCSLLNDVPSEYYAQLDATGRRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIQVVSQTIKSCLDELPGFPRTQIGFATFDSTVHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSLFQDNMNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGHLKLRGDDSRIYGTDKEHALRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLAKYSAGQLYYYPAFQSVTHGEKLRCELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLDETLLTTQTMYFQVALLYTASCGERRIRVHTAAAPVVTDLVEMYRHADTGAMLSLLSRLAIEKTLSHKLEEARSALQLRIVKGLREYRNVYPVQHRLANRMIFPESLKFLPLYGLALCRSTPLRGGYGDVPLDEQCAAGYTIMTLPIKRLLKLLYPSLVRLDEYLLKADDLKSIDRRLPLTGESLDSRGFYIHDDGFRFILWFGRMISPNIANNLLGSDHAVELSKVTLNENDNEVSRRLMKVLEKFRSTDRAYYQLCHLVRQGEQPREGFLLLSNLVEDQMGGNSGYADWMLQISRQVQQ* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1318 1023 Gene3D Severin 878 1002 IPR029006 -
Apr8g1318 1023 Gene3D von Willebrand factor, type A domain 435 672 IPR036465 -
Apr8g1318 1023 Pfam Sec23/Sec24 helical domain 770 873 IPR006900 GO:0006886|GO:0006888|GO:0030127
Apr8g1318 1023 SUPERFAMILY vWA-like 433 672 IPR036465 -
Apr8g1318 1023 MobiDBLite consensus disorder prediction 1 77 - -
Apr8g1318 1023 Gene3D Sec23/Sec24 helical domain 759 1021 - -
Apr8g1318 1023 Gene3D - 306 758 - -
Apr8g1318 1023 PANTHER OS04G0129500 PROTEIN 51 1023 - -
Apr8g1318 1023 Pfam Sec23/Sec24 zinc finger 359 396 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Apr8g1318 1023 Pfam Sec23/Sec24 trunk domain 433 669 IPR006896 GO:0006886|GO:0006888|GO:0030127
Apr8g1318 1023 SUPERFAMILY beta-sandwich domain of Sec23/24 197 768 - -
Apr8g1318 1023 MobiDBLite consensus disorder prediction 125 150 - -
Apr8g1318 1023 Pfam Sec23/Sec24 beta-sandwich domain 675 758 IPR012990 -
Apr8g1318 1023 CDD Sec24-like 433 674 IPR041742 GO:0006886|GO:0006888|GO:0030127
Apr8g1318 1023 Gene3D - 305 417 - -
Apr8g1318 1023 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 887 1023 IPR036180 -
Apr8g1318 1023 MobiDBLite consensus disorder prediction 50 74 - -
Apr8g1318 1023 PANTHER SEC24-RELATED PROTEIN 51 1023 - -
Apr8g1318 1023 SUPERFAMILY Helical domain of Sec23/24 770 877 IPR036175 GO:0006886|GO:0006888|GO:0030127
Apr8g1318 1023 SUPERFAMILY Zn-finger domain of Sec23/24 348 432 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1318 Apr-Chr8 19654286 19668860 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1318 K14007 - gmx:100791083 1586.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0638 4 5290230 5299475 Apr8g1318 8 19654286 19668860 PCT