Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0638 ATGGGGACTGAAAATCCCGGTCGTCCAACCTTCCCTGCAAGACCTGCTTCCTCACCCTTTGCTGCTGCACAGACTGTGACACCTTTTGCATCAACCGGTCCCATGGCCGGATCAGAGCCTCCTTCTTTTCGACCGGCTCCTCCCCAGAGCTCGATGCCATTTTCGCCGTCTGGACCTCCAGTTAGACCAGGGGCACCCAATTTTAGACCTACTCCACCTAGCAGGTTCAATGACCCATCAGTACCTCCTCCTCTCCAATCATCCAATGCCCCGCCTGCTGCCACACCTTTCCAGCATTTTCCGGCACCACCATTTTCCTCAACAACTCAACCACCCCTTGGACGTGCTCCGCCCTTGGGACAACCATCAATTCAATCTCCAGCTAGTCAAGCACCATCTTTTCCTCAGCAACAGATGCCTATTGTTCCAATGGGGTCGCCGCCGCCACCACCGCAAAGTGCCATTCCTGCACATTTAGGTCCAAATGTTCCTCCTCCTGCATTTCAGCCGTCTTTTCCCGGGTATGCCAGTAAGCAGCCTGGTGCCGCTGCTCAAGTTCCACCTATGCATTCCTCTCTCCCTGCTAATCAAGCAAATTATGGACCAGTCCCGTCTGCTGCACCTTCTCCTTTTTTATCTCATCAAGGAGGCTATGTTCCGTCACCCCCAATGGCTACTCCACCAGGAATCCAGCCAATGCACCCGCCAGGATCTGTGCCCCCAATGGGTGTTGTTCAGGGCTTGACAGAAGACTTCAGTGCGCTCACTATGCAAACTCGTCCTGGAACAATGGATCCACTATTTGACACTAAAGAACTTCCAAGGCCATTGGAAGGCGATGTTGAGCTAAACAATTTGGCTGACATGTATCCCATGAACTGCAATCCCCGATATCTCCGACTCACAACCAGTGCAGTTCCTAGCTCCCAGTCCTTGGCTGCAAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCAGAACCTCCTGATGGGGAAGAGGTTCCCATTGTTAATTTTGCTCCAGCTAGTGTTGTACGCTGCAGAAGATGTCGCACATATGTGAATCCTTATGTGACATTTACAGAAGCTGGAAGAAAGTTCCGCTGCAACGTCTGTACCTTGCTCAACGATGTTCCTAGTGAATATTATGCACAATTAGATGCGACTGGAAAAAGAGTTGATCTGAATCAACGACCTGAGCTGACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTCTATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCTCAAACAATCAAGTCATGCTTAGATGAGCTGCCTGGATTTCCACGTACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAATATGAAGTCATCCCTGACTCAACCACAGATGTTGGTGGTATCAGATCTAGATGATATATTTGTTCCTCTTCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTGGAAACCTTCCTAGATAGTTTGCCAACCATGTTCCAGGATAATGTTAACCTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCCCTTGGGGTTGGCCGCTTGAAGTTACGGGGAGATGATTCTCGTGTTTATGGGACAGACAAAGAGCATGGACTGAGACTGCCTGAAGATCCATTCTACAAGCAAATGGCTGCTGAGTTTTCCAAGTTCCAAATCTCAGCAAATGTGTATGCATTCAGTGATAAATACACCGATGTAGCCTCTTTAGGAACTCTGGCAAAGTATACTGCTGGTCAAGTATATTACTATCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGGCATGAGTTAAGGAGAGACCTTACCAGAGAAACTGCATGGGAATCTGTAATGCGTATTAGATGTGCGAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTCATGCTTAGGTCCACTGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTGTCTCTTGAAGAGACATTATTGACAACTCAGACGATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGAGAAAGGCGTATAAGAGTTCACACAATGGCAGTTCCAGTAGTGACAGACTTGCCAGATCTCTATCGCCTTGCTGATACTGGTGCAATCGTATCGCTGTTAAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGACGCACGGAGCGCTGTGCAACTACGAATTGTGAAAGCCCTCAGGGAATATCGAAATCTTTATGCTGTGCAACATCGCTTGGCCAACAGAATGATATATCCTGAGTCTTTAAAGTTCCTAATATTGTATGGATTAACTCTTTGTAAATCAACGGCTCTACGTGGAGGGTATGGTGATGTTCCACTGGATGAACGATGTGCTGCGGGACACATAATAATGACTGTACCAATAAAAAGACTGTTGAAGCTTCTATATCCTAGCTTGATTCGACTTGATGAATATCTTTTGAAGGCGACTGTACAGGCAGATGACTTAAAAAGCATTGAAAGGAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGAGGACTTTATATATATGATGATGGCTTCCGGTTCATTATATGGTTTGGTCGGGTGATTTCTCCTGATATAGCCAAGAATTTGCTTGGGGCAGACTTTGCAGCAGAATTATCAAAGACTAGTCTCATGGAGCATGATAATGAAATGTCAAGGAGGCTGATGAGGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCAACTTGTTAGGCAAGGTGAACAGCCCAAAGAAGGATTCCTCCTCCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGCTGATTGGATGCTACAGATATCCCGACAAGTGCAACAATCATAA 3051 0.4598 MGTENPGRPTFPARPASSPFAAAQTVTPFASTGPMAGSEPPSFRPAPPQSSMPFSPSGPPVRPGAPNFRPTPPSRFNDPSVPPPLQSSNAPPAATPFQHFPAPPFSSTTQPPLGRAPPLGQPSIQSPASQAPSFPQQQMPIVPMGSPPPPPQSAIPAHLGPNVPPPAFQPSFPGYASKQPGAAAQVPPMHSSLPANQANYGPVPSAAPSPFLSHQGGYVPSPPMATPPGIQPMHPPGSVPPMGVVQGLTEDFSALTMQTRPGTMDPLFDTKELPRPLEGDVELNNLADMYPMNCNPRYLRLTTSAVPSSQSLAARWHLPLGAVVCPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYVTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKFQISANVYAFSDKYTDVASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWESVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTDLPDLYRLADTGAIVSLLSRLAIEKTLSQKLEDARSAVQLRIVKALREYRNLYAVQHRLANRMIYPESLKFLILYGLTLCKSTALRGGYGDVPLDERCAAGHIIMTVPIKRLLKLLYPSLIRLDEYLLKATVQADDLKSIERRLPLTGESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKTSLMEHDNEMSRRLMRVLEKLRNTDRAYYQLCQLVRQGEQPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQQS* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0638 1016 Gene3D - 292 405 - -
Apr4g0638 1016 Pfam Sec23/Sec24 trunk domain 421 657 IPR006896 GO:0006886|GO:0006888|GO:0030127
Apr4g0638 1016 SUPERFAMILY Helical domain of Sec23/24 758 865 IPR036175 GO:0006886|GO:0006888|GO:0030127
Apr4g0638 1016 SUPERFAMILY beta-sandwich domain of Sec23/24 182 756 - -
Apr4g0638 1016 Pfam Sec23/Sec24 zinc finger 347 384 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Apr4g0638 1016 MobiDBLite consensus disorder prediction 1 161 - -
Apr4g0638 1016 MobiDBLite consensus disorder prediction 122 140 - -
Apr4g0638 1016 Pfam Sec23/Sec24 helical domain 758 861 IPR006900 GO:0006886|GO:0006888|GO:0030127
Apr4g0638 1016 PANTHER SEC24-RELATED PROTEIN 27 1015 - -
Apr4g0638 1016 Gene3D Sec23/Sec24 helical domain 747 1013 - -
Apr4g0638 1016 MobiDBLite consensus disorder prediction 141 161 - -
Apr4g0638 1016 Pfam Sec23/Sec24 beta-sandwich domain 663 747 IPR012990 -
Apr4g0638 1016 Gene3D - 294 746 - -
Apr4g0638 1016 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 873 1015 IPR036180 -
Apr4g0638 1016 CDD Sec24-like 421 662 IPR041742 GO:0006886|GO:0006888|GO:0030127
Apr4g0638 1016 Pfam Gelsolin repeat 893 946 IPR007123 -
Apr4g0638 1016 Gene3D von Willebrand factor, type A domain 423 660 IPR036465 -
Apr4g0638 1016 MobiDBLite consensus disorder prediction 40 90 - -
Apr4g0638 1016 Gene3D Severin 866 994 IPR029006 -
Apr4g0638 1016 SUPERFAMILY vWA-like 421 660 IPR036465 -
Apr4g0638 1016 PANTHER OS04G0129500 PROTEIN 27 1015 - -
Apr4g0638 1016 SUPERFAMILY Zn-finger domain of Sec23/24 337 420 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0638 Apr-Chr4 5290230 5299475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0638 K14007 - gmx:100791083 1773.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0638 4 5290230 5299475 Apr8g1318 8 19654286 19668860 PCT