Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1315 ATGGCCAAGGAAGCTTCTTTGTGCCTCTTGTTTCTCTCCTTTCTCATTATTTCTTGTTCTGGAGCTCCGGTGGGTTTTTCCTATCGTGAGAGAGGAGAGACTTCAACATCTGAAGGAACTATATTATTCCTCCAACAAAGCAAGGTTTCCTTATCTCAGATTCGAATTTTTGTCACAGATCATAGGACTTTGAGCACTCTCATCAACTCCAATGTATCAGTTGATGTCTACTTAAACAAAAGCCAACTTGACAATTTCATTACTTCAAAACCTTCTGGATTTTCTAGACTAAAAGCTCATCTACTAAACTTCCTCCCTCATTTTAACGTCAAAACCGTCATTGCAAGCTGTGGCAGTGAGTGCTTAGCCCAAAATGAGATGCCTTTGTTTTTACATGCCCTTAAATCAATTCATTCAGTTCTCAATGAGCTTCACACAGGCAAGGAAGTAAAAGTCTCAGTAGCATTTCCACTATCATTCTTAGAGAAGTTGAATGCATCACATGAAAACGAAATTCGTATGATTCTTTCATTTATACAGAAAATAAAATCCTCTGTCATGATAGAAGACAGCATTGAAGGGGAACTAAGCATGGGGAATCACTTTGTTCAGTCTATTATCAAACGAGCCACTTTTGCTGCTTCTATTCTTCCTTGCAAAGATGTTCCGATCGTTCTGACAATCAAGTGCCCAATTATCCTAAGTTCAACAGAAGCAGCTCAATTTAGTGAAAAGGTATCAAAATATATAGAAGCAAGAACTCATATTACAAAAAGAATAGCTGCATTATATGCAGAAGTGCATACAACAGAAGGTTTAGTTAAGAAAGAGACCCTAAGCAAATCCAACAAAAGGAGAAGTCTAGATGATACAACCAACCCAACAAACACAATTTACCCCTCAAATCCAACATCATCAATACCAATTATCACACCCCCAGATACACCAACAATCATCACAGTCCCTTCCACTAATCCAGTCACAATTTCACCCACCAATCCTGCTGCAATGCCTGTAACAGTTCCTTCTGCAACACCTGTGCCTATACCTCCCACAAATCCAGCCAATTCACCAGCACCACCAGTTTCCAATCCAGCTACAACAACTCCTGTAGGGACACAACCAGTAACCAACCCAGTGACATCTTATCCACCTCCATCACCGTCAGCGAGTGTTCCCGTCATAAACCCACAACCTCCCCCAGCAAACACAAATGCTCCAGCCATTCAGGGGCAGAGTTGGTGTGTGGCAAAAACAGGAACTCCTGAATCTTCTCTTCAAGCAGCATTGGACTATGCTTGTGGAATGGGGGGTGCAGATTGTTCTCAAATACAGCAAGGTGGGAGTTGTTACAGTCCAGTAACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGTTACTATCAGAAGAATCCAGCTCCAACAAGCTGTGACTTTGGAGGAACCGCCACCTTAGTTAATACTAATCCAAGCTCGGGTTCGTGCATTTTCCCATCATCATCGTCACCATCATCAACGCCAAAGTCATCATTCCCAACACCTCCTACACAATCAAGTCCAACATCTCTACCACCACCGAGTCCAGTAACACCTGCACCATCAGTTCCAACAACACCAACACCATCTATTCCAACAGCTCCACCAACAACATCGGCATCTTCAGGAGCAGGTACTTCCGGGTATGGTACCCCGCCTTCAGTGTTAAACTCAAGCAACCCAGCATCAGGTATGATGCCAGGTTTTGGGTCCGAAAGCCCTCCAGTTGTAAACACCACTTCGGCATCGCATTCTGTAGGTCTGAGACCTTCTCTTGGCTGCATTGTTCTGATGATATCATTTGTCACTACAAGACTAAGTGTGCACCTATAG 1869 0.4296 MAKEASLCLLFLSFLIISCSGAPVGFSYRERGETSTSEGTILFLQQSKVSLSQIRIFVTDHRTLSTLINSNVSVDVYLNKSQLDNFITSKPSGFSRLKAHLLNFLPHFNVKTVIASCGSECLAQNEMPLFLHALKSIHSVLNELHTGKEVKVSVAFPLSFLEKLNASHENEIRMILSFIQKIKSSVMIEDSIEGELSMGNHFVQSIIKRATFAASILPCKDVPIVLTIKCPIILSSTEAAQFSEKVSKYIEARTHITKRIAALYAEVHTTEGLVKKETLSKSNKRRSLDDTTNPTNTIYPSNPTSSIPIITPPDTPTIITVPSTNPVTISPTNPAAMPVTVPSATPVPIPPTNPANSPAPPVSNPATTTPVGTQPVTNPVTSYPPPSPSASVPVINPQPPPANTNAPAIQGQSWCVAKTGTPESSLQAALDYACGMGGADCSQIQQGGSCYSPVTLQNHASFAFNSYYQKNPAPTSCDFGGTATLVNTNPSSGSCIFPSSSSPSSTPKSSFPTPPTQSSPTSLPPPSPVTPAPSVPTTPTPSIPTAPPTTSASSGAGTSGYGTPPSVLNSSNPASGMMPGFGSESPPVVNTTSASHSVGLRPSLGCIVLMISFVTTRLSVHL* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1315 622 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 143 587 IPR044965 GO:0004553|GO:0005975
Apr8g1315 622 Gene3D Glycosidases 23 190 - -
Apr8g1315 622 MobiDBLite consensus disorder prediction 289 305 - -
Apr8g1315 622 SMART X8_cls 413 497 IPR012946 -
Apr8g1315 622 MobiDBLite consensus disorder prediction 348 365 - -
Apr8g1315 622 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Apr8g1315 622 MobiDBLite consensus disorder prediction 494 597 - -
Apr8g1315 622 Gene3D - 408 506 - -
Apr8g1315 622 PRINTS Proline rich extensin signature 291 303 - -
Apr8g1315 622 PRINTS Proline rich extensin signature 322 343 - -
Apr8g1315 622 PRINTS Proline rich extensin signature 344 360 - -
Apr8g1315 622 PRINTS Proline rich extensin signature 362 379 - -
Apr8g1315 622 PRINTS Proline rich extensin signature 381 406 - -
Apr8g1315 622 MobiDBLite consensus disorder prediction 508 546 - -
Apr8g1315 622 MobiDBLite consensus disorder prediction 348 372 - -
Apr8g1315 622 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 143 587 - -
Apr8g1315 622 Pfam X8 domain 414 484 IPR012946 -
Apr8g1315 622 MobiDBLite consensus disorder prediction 547 578 - -
Apr8g1315 622 MobiDBLite consensus disorder prediction 278 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1315 Apr-Chr8 19555953 19558855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1315 398 500 Glycoside Hydrolase AT2G05790 52.885 1.74e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1315 - - gmx:100781884 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1315 8 19555953 19558855 Apr8g1315 8 19555953 19558855 ECH
Apr4g0633 4 5253962 5256321 Apr8g1315 8 19555953 19558855 PCT