Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1307 ATGGGACGCATTCTAATAATATCATTAATAACGTTGTATATGATGTTTGTAGATCCATCTTACTTTGACCAAATCTGGGAAAGATTTTCTCTGACTATGGGGCACAAATATTTGTGGTTGGCTTTTTGTTTGTGGGCTTTAACATGCTCACTGCTCCCTTCTTTCTCCTTTGGACTTGTGAGAATTGGTTTGAAGAAGAGAGGTCTAGATCTTGATAGTATAAGAGCAGCTAGAATGGTTAGAGAAAAGCTAAGATTTGCCAGACCAGTGTTGGGTGCATATGATCAGTACATTGACAAACCAACCGATGAGGGTATAGTACCTTTGAAGAATTATTTGGATGCTCAATATTATGGGGAGATTGGAATTGGCACACCCCCACAGAAATTTGATGTCATATTTGATACCGGTAGTTCCAACCTCTGGGTTCCATCATCAAAGTGCTACTTTTCTCTTGCCTGCTATACCCATCGATGGTACAAGTCAAAGAAATCCAAAACATATACTAAAAATGGAACATCATGTAAAATAAGATATGGATCTGGATCAATATCTGGTTTTTTCAGTAAAGATAATGTTAATGTTGGCACTCTTGTTGTCAAGAATCAGGATTTCATTGAGGCTACTCGAGAAGGAAGTCTTTCCTTTGTGTTAGCGAAGTTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCAGTTGGAAATTCTGTGCCAGTATGGTACAATATGGTGGAGCAAAATCTTGTAGATGAGCAGGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAAGCAAAAAAGGGCGGTGAACTAGTTTTTGGAGGTGCTGATCCAAAACACTTCAAAGGAAATCATACTTATGTTCCAGTTACTAAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTATTTATTGGAGATTTCTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTAACTGAAATCAATCATGCTATTGGAGCCGAAGGAATTTTAAGTGTAGAATGTAAGGAAATTGTTTCTGATTATGGAGAATTGATATGGGATCTCTTGATATCAGGGGTACGACCTAGTGATGTATGCTCACAGGTTGGTTTATGTTTTGCCAAAAGGGGTCAATCAGAGAGAAATGAAATCGAGATGGTGACTGAAAAGGAACAGGGAAAGTTGTCGGCTAAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTTGTGATTTGGGTCCAAAATCAACTAAAACAAAAGTCAACCAAGGATAGAGTATTTGAATACGTAAATCAACTGTGCGAGAGCTTGCCAAGCCCAAATGGAGAGTCAGTAGTAAACTGTAATAGCATTTCTCATTTACCAAACATCACGATTACTATTGGACATAAACCTTTCATCCTCACTCCAGAGCAGTATATTTTGAAAACTGGAGAAGGCTTTGCAGAAGTTTGTCTTAGTGGGTTTATTGCTTTTGACATTGCTCCTCCACGGGGTCCTCTCTGGATTCTCGGCGATGTTTTCATGAGGGTATATCACACAATCTTTGACTATGGGAATCTCCGAGTTGGTTTCGCAAAAGCTGCCTGA 1623 0.3968 MGRILIISLITLYMMFVDPSYFDQIWERFSLTMGHKYLWLAFCLWALTCSLLPSFSFGLVRIGLKKRGLDLDSIRAARMVREKLRFARPVLGAYDQYIDKPTDEGIVPLKNYLDAQYYGEIGIGTPPQKFDVIFDTGSSNLWVPSSKCYFSLACYTHRWYKSKKSKTYTKNGTSCKIRYGSGSISGFFSKDNVNVGTLVVKNQDFIEATREGSLSFVLAKFDGLLGLGFQEISVGNSVPVWYNMVEQNLVDEQVFSFWLNGDPKAKKGGELVFGGADPKHFKGNHTYVPVTKKGYWQIEMGDLFIGDFSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGILSVECKEIVSDYGELIWDLLISGVRPSDVCSQVGLCFAKRGQSERNEIEMVTEKEQGKLSAKDTALCTSCQMLVIWVQNQLKQKSTKDRVFEYVNQLCESLPSPNGESVVNCNSISHLPNITITIGHKPFILTPEQYILKTGEGFAEVCLSGFIAFDIAPPRGPLWILGDVFMRVYHTIFDYGNLRVGFAKAA* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1307 540 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 37 540 IPR001461 GO:0004190|GO:0006508
Apr8g1307 540 ProSiteProfiles Peptidase family A1 domain profile. 117 537 IPR033121 -
Apr8g1307 540 ProSiteProfiles Saposin B type domain profile. 410 451 IPR008139 -
Apr8g1307 540 Pfam Saposin-like type B, region 2 351 383 IPR008138 -
Apr8g1307 540 SUPERFAMILY Saposin 349 449 IPR011001 -
Apr8g1307 540 Pfam Saposin-like type B, region 1 413 449 IPR007856 GO:0006629
Apr8g1307 540 Gene3D - 347 449 - -
Apr8g1307 540 PRINTS Pepsin (A1) aspartic protease family signature 123 143 IPR001461 GO:0004190|GO:0006508
Apr8g1307 540 PRINTS Pepsin (A1) aspartic protease family signature 269 282 IPR001461 GO:0004190|GO:0006508
Apr8g1307 540 PRINTS Pepsin (A1) aspartic protease family signature 319 330 IPR001461 GO:0004190|GO:0006508
Apr8g1307 540 PRINTS Pepsin (A1) aspartic protease family signature 513 528 IPR001461 GO:0004190|GO:0006508
Apr8g1307 540 Gene3D Acid Proteases 277 540 IPR021109 -
Apr8g1307 540 Gene3D Acid Proteases 60 275 IPR021109 -
Apr8g1307 540 CDD phytepsin 107 538 IPR033869 GO:0004190
Apr8g1307 540 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 319 330 IPR001969 GO:0004190|GO:0006508
Apr8g1307 540 SMART sapb_4 311 383 IPR008139 -
Apr8g1307 540 SUPERFAMILY Acid proteases 49 539 IPR021109 -
Apr8g1307 540 Pfam Eukaryotic aspartyl protease 116 539 IPR033121 -
Apr8g1307 540 ProSiteProfiles Saposin B type domain profile. 347 387 IPR008139 -
Apr8g1307 540 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 37 540 - -
Apr8g1307 540 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 132 143 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1307 Apr-Chr8 19480144 19485257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1307 K08245 - gmx:547993 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1307 8 19480144 19485257 Apr8g1307 8 19480144 19485257 ECH
Apr4g0629 4 5223480 5228599 Apr8g1307 8 19480144 19485257 PCT