Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0629 ATGTTTTGTCTGTATTTGGTGCTCCATTCTCGTATAACTTCTGTTTTTGATGGATCTGTGCATATATCCGACAGATTTAACTTGACCATGGGGCAACGGCAGGTAGTGGTGGCTTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCTTCTTTCTCTTTCGGAATTATGAAAATTGGTTTGAAGAAGAGACCTCTAGATCTTAACAGTATTAAGGCTGCTAGAAAGGCAAGAGAAGATCTAAGATCAGGAAGACCAATGATGGGTGCAATTGATCAATATATTGGTAAGTCAAATGATGAAGATATAGTACCTTTGAAGAATTATTTGGACGCTCAGTATTTTGGAGAGATTGGAATTGGCACACCTCCACAGCCCTTTACTGTCATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCATCATCGAAGTGCTACTTTTCTCTTGCCTGCTATACCCACAATTTTTACAAGGCAAAGAAATCCAAAACATATGCCAAAAATGGAACATCATGTAAAATATCCTATGGATCCGGATCAATATCTGGTTACTTCAGTCAAGATAATGTTAAAGTTGGCCATGCAGTTGTAAAGTACCAGGATTTCATTGAGGCTACCCGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTTGATGGAATACTAGGACTGGGATTTCAGGAGATCTCAGTTGAAAATTCTGTGCCAGTATGGTACAACATGATGGAGCAAAAATTTATCAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGGGAATCCAAATGCGAAAAAGGGTGGTGAACTAGTTTTTGGTGGTGCTGACCCAAAGCACTTCAAAGGAAACCACACCTATGTTCCAGTTACTAGAAAAGGTTACTGGCAGATAGAAATGGGGGATTTTTTCATTGGAGGTCTTTCAACAGGGGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCTATTGGAGCTGAAGGAATTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTAGTATCAGGGGTGAAACCTGATGAAATATGTTCACAAATTGGTTTATGTTCTGCCAAAAGGGTTCAATCTAAGAGCGCTGGGATTGAAATGGTGACTGAAAAGGAACAGAGTGAGATGACAGCTAGAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTCTGGATCCAGAATCAACTAAGACAAAAGGAAACAAAGGATAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTACCAAGTCCATCTGGAGAGTCAGTGATAAGCTGCAGTAGTCTTTCTAAAATGCCAAACATTACATTCACAATCGGAAATAAACCTTTTGTCCTCACACCAGAACAGTATATTTTGAGAACTGGAGAAGGCATTACAGAAGTGTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCACGTGGTCCACTATGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCATCTTTGACTACGGAAATCTCCAAGTTGGTTTCGCTGAAGCTGTCTAA 1614 0.4071 MFCLYLVLHSRITSVFDGSVHISDRFNLTMGQRQVVVAFCLWALTCSLLPSFSFGIMKIGLKKRPLDLNSIKAARKAREDLRSGRPMMGAIDQYIGKSNDEDIVPLKNYLDAQYFGEIGIGTPPQPFTVIFDTGSSNLWVPSSKCYFSLACYTHNFYKAKKSKTYAKNGTSCKISYGSGSISGYFSQDNVKVGHAVVKYQDFIEATREGSLSFLSAKFDGILGLGFQEISVENSVPVWYNMMEQKFISEKVFSFWLNGNPNAKKGGELVFGGADPKHFKGNHTYVPVTRKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGILSVECKEVVSQYGELIWDLLVSGVKPDEICSQIGLCSAKRVQSKSAGIEMVTEKEQSEMTARDTPLCSSCQMLVLWIQNQLRQKETKDRVFNYVNQLCESLPSPSGESVISCSSLSKMPNITFTIGNKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPRGPLWILGDVFMRAYHTIFDYGNLQVGFAEAV* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0629 537 Gene3D Acid Proteases 274 536 IPR021109 -
Apr4g0629 537 Pfam Saposin-like type B, region 1 409 446 IPR007856 GO:0006629
Apr4g0629 537 SUPERFAMILY Saposin 346 446 IPR011001 -
Apr4g0629 537 Gene3D - 344 446 - -
Apr4g0629 537 ProSiteProfiles Peptidase family A1 domain profile. 114 534 IPR033121 -
Apr4g0629 537 PRINTS Pepsin (A1) aspartic protease family signature 120 140 IPR001461 GO:0004190|GO:0006508
Apr4g0629 537 PRINTS Pepsin (A1) aspartic protease family signature 266 279 IPR001461 GO:0004190|GO:0006508
Apr4g0629 537 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Apr4g0629 537 PRINTS Pepsin (A1) aspartic protease family signature 510 525 IPR001461 GO:0004190|GO:0006508
Apr4g0629 537 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 316 327 IPR001969 GO:0004190|GO:0006508
Apr4g0629 537 CDD phytepsin 104 535 IPR033869 GO:0004190
Apr4g0629 537 SMART sapb_4 308 380 IPR008139 -
Apr4g0629 537 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 33 537 IPR001461 GO:0004190|GO:0006508
Apr4g0629 537 Pfam Saposin-like type B, region 2 348 380 IPR008138 -
Apr4g0629 537 Pfam Eukaryotic aspartyl protease 113 536 IPR033121 -
Apr4g0629 537 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 129 140 IPR001969 GO:0004190|GO:0006508
Apr4g0629 537 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 33 537 - -
Apr4g0629 537 Gene3D Acid Proteases 57 272 IPR021109 -
Apr4g0629 537 SUPERFAMILY Acid proteases 44 536 IPR021109 -
Apr4g0629 537 ProSiteProfiles Saposin B type domain profile. 344 384 IPR008139 -
Apr4g0629 537 ProSiteProfiles Saposin B type domain profile. 407 448 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0629 Apr-Chr4 5223480 5228599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0629 K08245 - gmx:548009 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0629 4 5223480 5228599 Apr8g1307 8 19480144 19485257 PCT