Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1279 ATGAATGTAGAGCTGGAGACTTGGACAGCTTTGCTTGTCATTTTGTGTTTCCTTGGGTTGATTCTAAAGGAATCGATCATGGGAGGTAAGAGCTCAAAAGGGTCTGATAGAAGACATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCATGGGATAACTATGGATACCCACAATCACCATATTCATACCCACAACAGAATCCGTATCATACACCTCACCACCCCCGTGCACCTGCTCAATTCCACGACTATGCACAGCCAAAAAGGAGGCTGGATAGGAGATATTCAAGAATATCCGATGATTACCAGTCACTGGATGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCATTGATTTTACAAAGAGCAATGAATGGACAGGGAAGAGGTCATTCAACAGAAAAAGTTTACATCATATTGGAAGTGGTCTTAATCCTTATGAACAAGCAATTTCGATTATTGGAAAAACTTTAAGTGCTTTCGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGGGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCAGATGCGACGTTCTGCAATGGGTTTGAGGAAGTTTTGTCAAGATATAGAGATATGGTTCCTCGCCTCCGACTTGCAGGACCCACTTCGTTTGCCCCTATTGTTGAGATGGCCACGACTATAGTTGAGCAAAGTGGCGGTCAATATCATGTCTTGCTGATAATTGCCGATGGACAGGTGACAAGAAGCGTTGACACACAACATGGTCAGTTAAGTCCACAAGAGCAGAAGACAATCGATGCAATTGTAAAAGCTAGCGAGTATCCACTGTCAATAGTTTTGGTGGGGGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTCACCGAAATAATGTCAAAGAGTGTAGATTCAAGCAGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTAGGCATATTGGGTGCAAGGAGGGGACATTCACCAGACAGAGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTTCTAGCAGCAGTGCGACATCTTTTCGTTCAAACAGTTTTCAGCAGAGTACAGCTACATATTCTGCCTACGATAATGGAATTAACACAGAATCAACTTCAGGTGGCTTATATGATAACAAGCTTTGTCCCATTTGTCTTACTAATGGAAAGGACATGGCCTTCGGTTGTGGACATCAGACTTGTTGTGACTGTGGAGAAGGCCTTGAATTCTGCCCCATTTGCCGGAGCACAATCAGTACCAGAATAAGGCTTTACTAG 1398 0.4263 MNVELETWTALLVILCFLGLILKESIMGGKSSKGSDRRHVSSYGSAGSSSSWDNYGYPQSPYSYPQQNPYHTPHHPRAPAQFHDYAQPKRRLDRRYSRISDDYQSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGLNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHSDATFCNGFEEVLSRYRDMVPRLRLAGPTSFAPIVEMATTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKSVDSSRKETEFALAALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPHYERASSSSSATSFRSNSFQQSTATYSAYDNGINTESTSGGLYDNKLCPICLTNGKDMAFGCGHQTCCDCGEGLEFCPICRSTISTRIRLY* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1279 465 PANTHER RING-FINGER PROTEIN 27 465 - -
Apr8g1279 465 MobiDBLite consensus disorder prediction 63 84 - -
Apr8g1279 465 CDD RING-HC_RGLG_plant 421 465 IPR045317 GO:0061630|GO:0070534
Apr8g1279 465 Pfam Zinc finger, C3HC4 type (RING finger) 419 460 - -
Apr8g1279 465 Pfam Copine 145 358 IPR010734 -
Apr8g1279 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 465 IPR013083 -
Apr8g1279 465 SUPERFAMILY vWA-like 121 304 IPR036465 -
Apr8g1279 465 MobiDBLite consensus disorder prediction 364 390 - -
Apr8g1279 465 ProSiteProfiles Zinc finger RING-type profile. 422 455 IPR001841 -
Apr8g1279 465 PANTHER COPINE FAMILY PROTEIN 1 27 465 - -
Apr8g1279 465 MobiDBLite consensus disorder prediction 29 50 - -
Apr8g1279 465 SMART VWA_4 120 323 IPR002035 -
Apr8g1279 465 SUPERFAMILY RING/U-box 416 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1279 Apr-Chr8 17855526 17859679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1279 K16280 - gmx:100800161 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1279 8 17855526 17859679 Apr10g2244 10 34712739 34717228 PCT