Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2244 ATGCACTTTGAGTTAGAAACTTGGACAGTTTTGATTGCTATTCTGTGCTTCTTGGGCTTTATTCTGAAGGATTCTCTCATGGGAGGGAAGAGTTCAAAAGGTTCTGGAAGGAGGTATGAATCTGCTGCTGCTTCATCTTCATGGGATAGCTATGGTGGATACCCACCACAGTCACCATACCCTTCATATCAAACTCCTCAGCATCAGCATGCATCAGCATCAGCTCCATTTTATGATTATGCACAACCAAAAAGGAAGTTGGATAAGAGGTATTCCAGGATAGCTGATAATTACCGTTCACTGGATGAGGTTACTGCTGCTCTTGCTAATGCTGGACTGGAATCTTCTAATCTCATCGTTGGCATTGATTTTACGAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGTCATAACCCTTATGAACAAGCAATCTCTATTATTGGAAAAACTTTATCTGTGTTCGATGAAGATAACATTATTCCTTGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGTTTCTATTCTGAAGAAAGGTTCTGCAACGGGTTTGAGGAAGTTTTGACACGATACAGAGAAATAATTCCTTACCTCAAACTCGCAGGACCCACTTCGTTTGCCCCTATTATTGAAATGGCTGTGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCGGATGGACAGGTAACCAGAAGCATTGACACACAGCATGGCCACTTAAGTCCACAGGAACAGAAGACAATAGATGCTATTGTGAAAGCCAGTGAGTATCCATTGTCAATAGTTTTGGTTGGAGTTGGAGATGGACCATGGGACATGATGAGGGAATTTGATGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTCGTGAATTTTACTGAAATAATGACGAAGCATATAGATTCAGCCAGAAAAGAGACAGAATTTGCCCTTGCAGCATTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGATTATTGGGTGCACGGAAGGGACATTCACCAGACAGGGTTCCGCTACCTCCGCCTCTTTATAATAGGACATCTTCCAACCTCAGCACAAAATCTTCAAGGTCAAACAGTTTTCAGCAGAGGCCACCTACATATTCTAGCTATGATAGTGGTGTTCACATGGAATCATCAACAAGTTCGTTACACGATAATAAGGTTTGCCCGATTTGTCTTACGAATGGGAAGGACATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAATGTGGAGACGACCTCCAATTCTGTCCCATTTGCCGTAGTACAATCCATACACGAATAAGGCTTTACTAG 1383 0.4172 MHFELETWTVLIAILCFLGFILKDSLMGGKSSKGSGRRYESAAASSSWDSYGGYPPQSPYPSYQTPQHQHASASAPFYDYAQPKRKLDKRYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGHNPYEQAISIIGKTLSVFDEDNIIPCFGFGDASTHDQDVFSFYSEERFCNGFEEVLTRYREIIPYLKLAGPTSFAPIIEMAVTIVEQSGGQYHVLLIIADGQVTRSIDTQHGHLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTKHIDSARKETEFALAALMEIPSQYKATIELGLLGARKGHSPDRVPLPPPLYNRTSSNLSTKSSRSNSFQQRPPTYSSYDSGVHMESSTSSLHDNKVCPICLTNGKDMAFGCGHQTCCECGDDLQFCPICRSTIHTRIRLY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2244 460 PANTHER RING-FINGER PROTEIN 27 460 - -
Apr10g2244 460 SMART VWA_4 115 318 IPR002035 -
Apr10g2244 460 Pfam Copine 140 353 IPR010734 -
Apr10g2244 460 ProSiteProfiles Zinc finger RING-type profile. 417 450 IPR001841 -
Apr10g2244 460 MobiDBLite consensus disorder prediction 358 410 - -
Apr10g2244 460 CDD RING-HC_RGLG_plant 416 460 IPR045317 GO:0061630|GO:0070534
Apr10g2244 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 460 IPR013083 -
Apr10g2244 460 SUPERFAMILY RING/U-box 405 454 - -
Apr10g2244 460 Pfam Zinc finger, C3HC4 type (RING finger) 414 454 - -
Apr10g2244 460 SUPERFAMILY vWA-like 116 299 IPR036465 -
Apr10g2244 460 MobiDBLite consensus disorder prediction 370 410 - -
Apr10g2244 460 PANTHER COPINE FAMILY PROTEIN 1 27 460 - -
Apr10g2244 460 CDD vWA_copine_like 94 344 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2244 Apr-Chr10 34712739 34717228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2244 K16280 - gmx:100798816 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1279 8 17855526 17859679 Apr10g2244 10 34712739 34717228 PCT