LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g1253	ATGGGAGGCAGTGGAAGATCACGCACTCAGAGAAAGCATTTCCGTCAAAGCAGAGAAAACATTTGGAAGCGTTCCAAATCGGAGTCCGATCCTTCTTCACTCTCTGATACCCAAAATCCTACTTGGACTCCATTCGCCACTCAGAACTCCTCTTTCGATTCCTATTACAAAGAGCAACGAATAGTAGAACCGCAACAGTGGGATCAATTCGTTTCAGTTCTCAGAACTCCATTACCCGCAACCTTTCGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAATTGGAGAATGACTTTGTGCATTCTCTTCGTGACGAGGTTGCTGAAGGGGGTGAGACAGAGGCCATTCGGCCATTGCCGTGGTATCCTGGGAATTTTGCTTGGCATTCTAATTTTTCTCGGATGCAGCTTAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTAAAACTAGAAAATGAGATTGGAAATATTACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAGTCAACCAAAACAGGATCATTACCAAATGGAATGGTTATTGCAAATGATCTGGATGTCCAAAGATGTAATCTTCTTATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACAAATCATGAAGCACAACACTTTCCAGGATGCCGTTTAAACAGAAATTATGAAAGGATGGAGTTAGATCACAATTTTGGCCAACTGTTATTTGACCGTGTTCTGTGTGATGTGCCATGCAGTGGAGATGGTACCCTTCGAAAGGCACCTGATCTCTGGAGGAAATGGAACACAGGGATGGGACATGGTCTTCACAGTCTACAAGTTTTAATTGCTATGCGAGGCGTATCTTTACTTAAAATTGGTGGAAGAATGGTTTATTCAACGTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGTTGAGGTTTTACGGAGGTGTGGAGGATCTGTTAAACTTGTTGATGTCTCTTGTGAGCTTCCACAACTTATTCATCGGCCAGGTCTCAATAGATGGAAGGTATATGACAAGGGCACTTGGTTAGTCTCTTACAAAGATGTTCCTAAGTTCCGTAGAAGTGTAATTCTTCCCAGTATGTTTCCTTCTGGTAGAGACCAACAGGATCCTATTGATAGTAGTTATGGTAGTCAAGCAGTAGAGAATCCTGTGACGACTGAGTCTGCTGAGGAAGTTTCTGATTTCCCTCTAGAGCACTGCATGAGGATTGTGCCCCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTATTGCAAAAAGTTTCTCCTCTGCCAGGAACTCCAGAAAAAACTAGAAAGGAAATTGATGAGCAATATGTAGAACCAGCAAACCAGAGTCTTCAGGATGCATATGAAGAAGTCTTAAACACAGTTTCAAATGACAATGAACCCAATGCAGAAGATTTGGAAGTTAGCCCGATCACATGTGAAGAACATAATTCAGAGGAAACTCAAGTGCCCCATAATGTACAAAACATTGTAAAGAGGGTTCCGGGCAAGAGAAAGCTACAAATACAAGGCAAATGGAGAGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAGCAATTATTAATAGTATAAGGGATTTTTATGGAATCGATGAGCGTTTCCCATTTAATGGTCACCTTGTTACAAGAAACAGTGATACTAGTCATGTGAAGAGAATTTACTATATCTCCAAATCAGTCAAGGATGTTCTTGAATTGAACTTTAAAGTCGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGGCAAACAGCACGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCTCTTATTCTCCCATACATTACCAAACAGATTCTGCATGCATCACCGACAGACTTCAAGCATCTTCTGCAGAACAAGGATATAAAGTTTGCAGATTTTGTTGATGGCGAGTTTGGTGAAAAGGCAGCAAACCTAATGCCAGGCTGTTGTGTGGTAATTCTGGGTAAAGGAAAGAGAGTTGTTACAGAGTCCCTCAAGGTGGATGAGTCAACAATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGACAGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGTTTTGACACTGAAAAGTGTTCTCCTGGGCATGTGGACAAATCTTCCAAGGATGTGGTAGGTGAAATACAGCCTGTACAAGAGTTGAACAGTAAAGATGATGATGATGTGAAAGCTCTTGCTAGCTAA	2388	0.4183	MGGSGRSRTQRKHFRQSRENIWKRSKSESDPSSLSDTQNPTWTPFATQNSSFDSYYKEQRIVEPQQWDQFVSVLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVAEGGETEAIRPLPWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKTGSLPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDHNFGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGVSLLKIGGRMVYSTCSMNPIENEAVVVEVLRRCGGSVKLVDVSCELPQLIHRPGLNRWKVYDKGTWLVSYKDVPKFRRSVILPSMFPSGRDQQDPIDSSYGSQAVENPVTTESAEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPGTPEKTRKEIDEQYVEPANQSLQDAYEEVLNTVSNDNEPNAEDLEVSPITCEEHNSEETQVPHNVQNIVKRVPGKRKLQIQGKWRGVDPVVFFKDEAIINSIRDFYGIDERFPFNGHLVTRNSDTSHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPTDFKHLLQNKDIKFADFVDGEFGEKAANLMPGCCVVILGKGKRVVTESLKVDESTIAIGCWKGRARLTVMVTAMDCQELLERLLIRFDTEKCSPGHVDKSSKDVVGEIQPVQELNSKDDDDVKALAS*	796

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g1253	795	MobiDBLite	consensus disorder prediction	409	432	-	-
	Apr8g1253	795	Gene3D	Vaccinia Virus protein VP39	46	463	IPR029063	-
	Apr8g1253	795	Pfam	16S rRNA methyltransferase RsmB/F	175	360	IPR001678	GO:0008168
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	131	152	IPR023270	GO:0016428
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	359	378	IPR023270	GO:0016428
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	620	632	IPR023270	GO:0016428
	Apr8g1253	795	MobiDBLite	consensus disorder prediction	1	45	-	-
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase signature	185	195	IPR023267	GO:0001510
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase signature	275	287	IPR023267	GO:0001510
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase signature	325	341	IPR023267	GO:0001510
	Apr8g1253	795	PRINTS	RNA (C5-cytosine) methyltransferase signature	446	463	IPR023267	GO:0001510
	Apr8g1253	795	MobiDBLite	consensus disorder prediction	405	434	-	-
	Apr8g1253	795	MobiDBLite	consensus disorder prediction	14	30	-	-
	Apr8g1253	795	MobiDBLite	consensus disorder prediction	31	45	-	-
	Apr8g1253	795	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	4	758	IPR023267	GO:0001510
	Apr8g1253	795	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	64	464	IPR029063	-
	Apr8g1253	795	ProSitePatterns	NOL1/NOP2/sun family signature.	274	285	IPR018314	GO:0003723\|GO:0008168
	Apr8g1253	795	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	4	758	-	-
	Apr8g1253	795	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	70	464	IPR001678	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g1253	Apr-Chr8	17490879	17499524	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g1253	K15334		-	gmx:100808859	1338.94

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr8g1253	8	17490879	17499524	Apr10g2219	10	34569739	34575861	PCT