LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g2219	ATGGAGGAAAGAAAAGGAGGGAACAATCGAACTCAAAGGAAGCATTTCCAGCAGAAGAGAGAGAACGTGTGGAAGTGGAAGCGTCCTAAATCAGATCTTTCCTCCGCAAATTCTACTCAAACTCCATTTGATACTCAAAACTTTGCTTTCGATAATTATTACAAGGAGCAGCGAATCGTATCCTCACAAGAATGGCTTGCTTTCATGCAAGTTCTCAGAACTCCATTGCCTGCAACATTCAGAATCAATTCCAGTAGCCGGTTTTGTGCCGATATTGGGTCACAACTTGAGAATGATTTCGTGCATTCTCTTCAGGCCGAGATTGCGGAAGGGGATGATACGGAGGCTATTATACCTTTGCTGTGGTATCCTAAGAATCTTGCCTGGCATTCTAATTTTTCACGTATGCAGCTCAGGAAGAATCAAATACTTGGGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCTCCCCTATTGTTGGATGTACAATCAAATCATTTTGTACTTGACATGTGTGCAGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTTTACACCGGTCAGCTAAAGCAGGATCACTGCCTGATGGAATGGTTATAGCAAATGATTTAGACATCCAAAGATGTAATCTTCTCATTCACCAAATGAAACGAATGTGCACAGCCAACCTAGTTGTCACCAATCACGAAGCTCAGCACTTCCCAGGATGTCTTTTAAATGGGAATGATAATAATATGGAGCCAGATCAGCATGCCCAGCTATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGTGGTGATGGCACCCTACGTAAGGCACCTGATCTCTGGAGGAAGTGGAACACGGGGACAGGAAATGGGCTTCATAACCTACAAGTTCTAATTGCTATGAGAGGTGTATCTTTACTTAAAGTTGGTGGAAAAATGGTTTATTCTACCTGCTCAATGAATCCTATAGAGAATGAAGCTGTTGTTGCAGAGGTTTTGCGGAGGTGTGGAGGGTCCATTGAACTTGTTGATGTCTCTAGTGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTTATGAGATGGAAGGTATGTGACAAGGGCAAGTGGATGGTCTCTTGCAAAGATGTTCCCAAGTTTCGTAGAAGTGTAGTTTTTCCCAGCATGTTTCCGAATGGTGGAAGCTATCAGGATGTTGTTGACAGTAATTGCAATATTAAAATTGGGGATGATATTAATGTGGATGATGTTAATGGAAATTCTGAAGATGGTGTTCAAGCAGTGGAGAATACTGTCATGCATGAGTTTAGTGGGGAAGTTTCTGATCTCCCACTAGAGCGGTGCATGAGGTTAGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTTTTGCAGAAGGTTTCTCCTCTGCCCGCAATTCAGGTAAAACCGAGAAAAGAAGTCGATAAATGTGTTGAAAAAGCAAACCAGGGCACTGAGGATGCACAAGTATTGCCGATTAATCTATCAGAAAGTACACATGAAGAAATTTTGGAAGAAGTTTCAGAGGCGAATAATGACAATGAACCTAATGTAGCAGAGTTGAAGGTTAGTTCCGTTACATGTGAAGAAGGGAATTTCAAGGAAGCCCACGAACCCTGCAGTGTAGAAAACATAAGAAAGATTACTCCAGGCAAAAGAAAACTGCAGATTCAAGGCAAATGGAGAGGTGTTGACCCTGTTGTCTTCTTCAAAGATGAATTAATTATTAATAGCATAAAGGCATTTTATGGTATCAATGAGCGGTTTCCATTCAATGGTCACCTTGTAACAAGAAACAATGACACAAGCCACGTGAAAAGAATTTACTATGTTTCCAAGTCGGTGAAGGATGTTCTCGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGATTTTTGAAAGACAAACGTCATGTGAAGGTAGGTCGGCACCATGTGCTTTCAGGATCTCTTCTGAAGGATTGCCCCTTATTCTCCCTCACGTCACCAAACAGATTCTACGTGCAGCCGCTATAGACTTCAAGCATCTTCTGCAGTATAGATCTGTAAAATTTGCAGATTTTGTTGATGCCGAGTTTGGTGAAAGAGCGGCGAACCTAATGCCCGGCTGTTGTGTGGTAGTTCTGAGTGATGGGAGTAAAGCTGCTACAGAGACCTCCCGAGTGGACGAGTCAGCAATAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTGATGGTCAGTGTAATGGAATGCCAAGAACTGCTCGAAAGGCTTTCAATGCGTCTAGACACAGTAACAGAAAAGGACTCTTCCATGCATGAGGACAAACCGTCTAATAACGTGGGAGATGAAACACAGGAATCAATCGGTAAAAATGAAGCTGTGGAAGCTACTGGGTGTTAA	2469	0.4249	MEERKGGNNRTQRKHFQQKRENVWKWKRPKSDLSSANSTQTPFDTQNFAFDNYYKEQRIVSSQEWLAFMQVLRTPLPATFRINSSSRFCADIGSQLENDFVHSLQAEIAEGDDTEAIIPLLWYPKNLAWHSNFSRMQLRKNQILGRFHEFLKLENEIGNITRQEAVSMVPPLLLDVQSNHFVLDMCAAPGSKTFQLLEILHRSAKAGSLPDGMVIANDLDIQRCNLLIHQMKRMCTANLVVTNHEAQHFPGCLLNGNDNNMEPDQHAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGKMVYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELPQLIRRPGLMRWKVCDKGKWMVSCKDVPKFRRSVVFPSMFPNGGSYQDVVDSNCNIKIGDDINVDDVNGNSEDGVQAVENTVMHEFSGEVSDLPLERCMRLVPHDQNTGAFFIAVLQKVSPLPAIQVKPRKEVDKCVEKANQGTEDAQVLPINLSESTHEEILEEVSEANNDNEPNVAELKVSSVTCEEGNFKEAHEPCSVENIRKITPGKRKLQIQGKWRGVDPVVFFKDELIINSIKAFYGINERFPFNGHLVTRNNDTSHVKRIYYVSKSVKDVLELNFSVGQQLKITSVGLKIFERQTSCEGRSAPCAFRISSEGLPLILPHVTKQILRAAAIDFKHLLQYRSVKFADFVDAEFGERAANLMPGCCVVVLSDGSKAATETSRVDESAIAIGCWKGRASLTVMVSVMECQELLERLSMRLDTVTEKDSSMHEDKPSNNVGDETQESIGKNEAVEATGC*	823

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g2219	822	MobiDBLite	consensus disorder prediction	1	40	-	-
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	129	150	IPR023270	GO:0016428
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	356	375	IPR023270	GO:0016428
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	649	661	IPR023270	GO:0016428
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase signature	183	193	IPR023267	GO:0001510
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase signature	272	284	IPR023267	GO:0001510
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase signature	322	338	IPR023267	GO:0001510
	Apr10g2219	822	PRINTS	RNA (C5-cytosine) methyltransferase signature	462	479	IPR023267	GO:0001510
	Apr10g2219	822	ProSitePatterns	NOL1/NOP2/sun family signature.	271	282	IPR018314	GO:0003723\|GO:0008168
	Apr10g2219	822	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	1	796	IPR023267	GO:0001510
	Apr10g2219	822	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	68	480	IPR001678	GO:0008168
	Apr10g2219	822	MobiDBLite	consensus disorder prediction	787	822	-	-
	Apr10g2219	822	MobiDBLite	consensus disorder prediction	787	803	-	-
	Apr10g2219	822	MobiDBLite	consensus disorder prediction	1	28	-	-
	Apr10g2219	822	Pfam	16S rRNA methyltransferase RsmB/F	172	348	IPR001678	GO:0008168
	Apr10g2219	822	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	1	796	-	-
	Apr10g2219	822	Gene3D	Vaccinia Virus protein VP39	46	387	IPR029063	-
	Apr10g2219	822	Coils	Coil	770	790	-	-
	Apr10g2219	822	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	54	480	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g2219	Apr-Chr10	34569739	34575861	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g2219	K15334		-	gmx:100808598	1327.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr8g1253	8	17490879	17499524	Apr10g2219	10	34569739	34575861	PCT