Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1252 ATGGCAGGTGCAGGAGGAGGGTATGGAGATGCAAACCAGAGGATAGACTACGTATTCAAGGTGGTGCTGATAGGGGACTCAGCGGTGGGGAAGTCACAGATATTAGCGAGGTTTGCGAGGAACGAGTTCAGCTTGGACTCGAAGTCCACCATCGGTGTTGAATTTCAGACACGCACTTTGGTCATCGATCACAAGACCGTCAAGGCTCAGATCTGGGACACTGCAGGCCAAGAACGATACAGAGCAGTTACAAGTGCATATTACAGGGGTGCTGTTGGGGCAATGTTGGTTTATGACATCACTAAACGCCAGACCTTCGATCACATACCCCGTTGGTTAGAAGAACTGCGTAACCATGCTGACAAGAATATAGTCATCATTCTCATAGGAAACAAATGTGATCTTGAGAACCAGCGTGATGTACCCACCGAGGATGCAAAAGAGTTTGCCGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCAGCACTGGAAGCAACAAATGTTGAAACAGCCTTCATGACTGTCTTGACAGAAATCTACAACATTGTCAACAAGAAGAATCTAACTATAAATATTACAAACCCTAGTTCATATCTACTCAACTAA 606 0.4505 MAGAGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIYNIVNKKNLTINITNPSSYLLN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1252 201 Pfam Ras family 20 180 IPR001806 GO:0003924|GO:0005525
Apr8g1252 201 ProSiteProfiles small GTPase Ras family profile. 11 193 IPR001806 GO:0003924|GO:0005525
Apr8g1252 201 SMART rab_sub_5 19 182 - -
Apr8g1252 201 SMART ran_sub_2 24 199 - -
Apr8g1252 201 PRINTS Transforming protein P21 ras signature 19 40 - -
Apr8g1252 201 PRINTS Transforming protein P21 ras signature 42 58 - -
Apr8g1252 201 PRINTS Transforming protein P21 ras signature 60 82 - -
Apr8g1252 201 PRINTS Transforming protein P21 ras signature 122 135 - -
Apr8g1252 201 PRINTS Transforming protein P21 ras signature 157 179 - -
Apr8g1252 201 SMART arf_sub_2 4 196 - -
Apr8g1252 201 CDD Rab11_like 16 180 - -
Apr8g1252 201 ProSiteProfiles small GTPase Rho family profile. 12 180 - -
Apr8g1252 201 ProSiteProfiles small GTPase Rab1 family profile. 14 201 - -
Apr8g1252 201 TIGRFAM small_GTP: small GTP-binding protein domain 18 175 IPR005225 GO:0005525
Apr8g1252 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 190 IPR027417 -
Apr8g1252 201 SMART ras_sub_4 16 182 - -
Apr8g1252 201 Gene3D - 11 197 IPR027417 -
Apr8g1252 201 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 191 - -
Apr8g1252 201 PANTHER - 1 191 - -
Apr8g1252 201 SMART rho_sub_3 21 178 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1252 Apr-Chr8 17486745 17489991 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1252 K07904 - gmx:100780896 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1252 8 17486745 17489991 Apr10g2217 10 34559387 34569068 PCT