Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2217 ATGTCATGTGTTTATGGAGATCCGAACCAGAAGATAGATTACGTGTTCAAGGTGGTGCTAATAGGTGACTCCGCCGTGGGGAAGTCGCAGATACTTGCTCGTTTTGCCAGAAACGAGTTCAGCTTGGACTCTAAAGCCACCATCGGCGTCGAGTTTCAGACTCGAACTTTGGTCATTCAACACAAGAGCGTCAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCAGTCACAAGTGCATACTACAGAGGTGCTGTTGGGGCAATGTTGGTTTATGACATCACAAAACGTCAGAGCTTTGATCACATACCTCGTTGGTTAGAAGAATTGCGTAACCATGCTGATAAGAATATAGTCATCATTCTTATAGGTAACAAAAGTGATCTTGAGAACCAGCGTGCGGTACCCACAGAGGATGCAAAAGAATTTGCAGAGAAAGAAGGCCTGTTTTTCCTGGAGACCTCAGCACTCGAAGCAACTAACGTTGAAACAGCCTTCATGACTGTTTTGACAGAAATCTTCAACATTGTCAACAAGAAGAATCTAACTGCTGATGAAAATCAGGGAAATGGAAACTCAGCATCTCTGTCTGGCAAGAAGATTATTGTTCCTGGTCCTGCACAAGAAATCCCCGCTAAGAGGAGCATGTGTTGTCAGTAA 669 0.4469 MSCVYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGNKSDLENQRAVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIVNKKNLTADENQGNGNSASLSGKKIIVPGPAQEIPAKRSMCCQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2217 222 Pfam Ras family 17 176 IPR001806 GO:0003924|GO:0005525
Apr10g2217 222 PANTHER - 4 221 - -
Apr10g2217 222 ProSiteProfiles small GTPase Ras family profile. 10 220 IPR001806 GO:0003924|GO:0005525
Apr10g2217 222 SMART ras_sub_4 13 179 - -
Apr10g2217 222 PANTHER RAB GTPASE-LIKE PROTEIN A1D 4 221 - -
Apr10g2217 222 SMART rho_sub_3 18 175 IPR001806 GO:0003924|GO:0005525
Apr10g2217 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 185 IPR027417 -
Apr10g2217 222 SMART arf_sub_2 1 183 - -
Apr10g2217 222 PRINTS Transforming protein P21 ras signature 16 37 - -
Apr10g2217 222 PRINTS Transforming protein P21 ras signature 39 55 - -
Apr10g2217 222 PRINTS Transforming protein P21 ras signature 57 79 - -
Apr10g2217 222 PRINTS Transforming protein P21 ras signature 119 132 - -
Apr10g2217 222 PRINTS Transforming protein P21 ras signature 154 176 - -
Apr10g2217 222 CDD Rab11_like 13 177 - -
Apr10g2217 222 SMART ran_sub_2 21 219 - -
Apr10g2217 222 ProSiteProfiles small GTPase Rab1 family profile. 11 221 - -
Apr10g2217 222 SMART rab_sub_5 16 179 - -
Apr10g2217 222 Gene3D - 9 212 IPR027417 -
Apr10g2217 222 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
Apr10g2217 222 TIGRFAM small_GTP: small GTP-binding protein domain 15 172 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2217 Apr-Chr10 34559387 34569068 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2217 K07904 - jre:109014562 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1252 8 17486745 17489991 Apr10g2217 10 34559387 34569068 PCT