Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0827 ATGGCCCTCCACGGACATTACCTTTCATTCATTATTATAATGGTTTCTTTTGTTGCTTGTTGTAGTACATTTCAAGAGGACCCACTTAGTTCATTTCTTGAGGGTTCGCCTAATATTGATGATGGTGCCACATTCAAGGACTTCATCAAGCAAAGTACAGATGTATTGAGCTTAAAGAGTTTTGACAAGTTGGGTGACATTTCCTCTTCGCTTAAAACTGTTAGCGTCAATGATTATGGAGCTCAAGGTGATGGTAAAACTGATGACACAAAGGCATTCATGAAGGCTTGGCAAGTGGCATGTTCTTCTGGGGGAGCAGTTCTTGTAGTGCCTCAGAAGAATTATCTACTCAAGCCGATCACATTTTCTGGCCCTTGCAAATCCAACATCGCAGTTCAGATCTCTGGAACAATTGAAGCATCAGATACCCCATCGGATTTCAACGAAGATCCCACACACTGGCTTATGTTCGACAGTGTTCAGAAACTATCAGTTAACGGTGGTGGAACCATCAATGGAAATGGAAACACATGGTGGCAAAACTCATGCAAAAGGAACAAAAATCTCCCTTGCAAGGATGCCCCTACGGCGTTGACTTTCTACAAATGCAGCAACTTGGTAATTGAGGATTTGACGATAAAAAATGGGCAACAAATCCATGTTACATTCGAGGACTCCGAGAATGTTAAAGTTTCTGGTCTCACAGTGACAGCACCAGAGGATAGCCCAAACACCGATGGAATTCATGTCACAAACACCCAAAACATTCAAATCTCAAGCTCCGTCATAGGAACTGGTGATGATTGTATATCAGTTGTAAGTGGAACCAGGAATCTACTAGCCACAGATATAACCTGTGGACCTGGCCATGGTATCAGCATCGGAAGCTTAGGGGCTGGGGAGTCCAAGGAATTTGTTTCAGGAATAATGATTAAAGGAGCAAAGTTTTCTGGAACTACAAATGGAGTAAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCCAGTTTCAGAATATTCAAATGGACAATGTGAGCAACCCCATAATAATAGATCAGAACTACTGTGACCAAGCGGAACCATGCAAACAACAGCAATCTGCAGTTCAGATTAGGAATGTGTTGTACCAAAACATAAAAGGCACAAGTGCTTCTGATATGGCTGTGCAATTTGATTGCAGCAAGAACTTTCCATGTCAGGGACTTGTAATGCAGAACGTAGACTTGCAATCTAAAAGTGGAGTGGCAAAGGCTTCATGTGACAGTGTTAAATTGTCCTACAGAGGAGATGTTAACCCTCGCTGCCCATAG 1320 0.4258 MALHGHYLSFIIIMVSFVACCSTFQEDPLSSFLEGSPNIDDGATFKDFIKQSTDVLSLKSFDKLGDISSSLKTVSVNDYGAQGDGKTDDTKAFMKAWQVACSSGGAVLVVPQKNYLLKPITFSGPCKSNIAVQISGTIEASDTPSDFNEDPTHWLMFDSVQKLSVNGGGTINGNGNTWWQNSCKRNKNLPCKDAPTALTFYKCSNLVIEDLTIKNGQQIHVTFEDSENVKVSGLTVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISVVSGTRNLLATDITCGPGHGISIGSLGAGESKEFVSGIMIKGAKFSGTTNGVRIKTWQGGSGSASNIQFQNIQMDNVSNPIIIDQNYCDQAEPCKQQQSAVQIRNVLYQNIKGTSASDMAVQFDCSKNFPCQGLVMQNVDLQSKSGVAKASCDSVKLSYRGDVNPRCP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0827 439 SMART pbh1 306 327 IPR006626 -
Apr8g0827 439 SMART pbh1 203 223 IPR006626 -
Apr8g0827 439 SMART pbh1 226 252 IPR006626 -
Apr8g0827 439 SMART pbh1 335 356 IPR006626 -
Apr8g0827 439 SMART pbh1 253 274 IPR006626 -
Apr8g0827 439 Gene3D - 66 434 IPR012334 -
Apr8g0827 439 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
Apr8g0827 439 SUPERFAMILY Pectin lyase-like 71 438 IPR011050 -
Apr8g0827 439 PANTHER - 6 438 - -
Apr8g0827 439 Pfam Glycosyl hydrolases family 28 107 427 IPR000743 GO:0004650|GO:0005975
Apr8g0827 439 PANTHER ENDO POLYGALACTURONASE 6 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0827 Apr-Chr8 8627738 8631005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0827 36 438 Glycoside Hydrolase AT2G41850 57.349 3.66e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0827 K01184 - gmx:100816917 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0827 8 8627738 8631005 Apr8g0827 8 8627738 8631005 ECH
Apr8g0827 8 8627738 8631005 Apr4g1204 4 10588360 10591186 PCT