Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1204 ATGGCCCTCCTCAAGCATCTCCTCGTCTCATTCACCATCATAATCTCTTTTGTTGCTTGCTATAGTTCCTTGCAAGAGGACCCACTTAATGGCATTTATGTTGATAACTCACCTTCCATTGATGATATTGGTGGGACATTTAAGAACCCAATCAAGCAAAGCACAGACATCATTTCTAGTTTATACAGGTTTCTAGATTTGGGTGGCACTTCCAGTTCGATTAAAATGGTTAATGTCAATGATTATGGAGCGAAAGGGAATGGTGGTGAAGATGACACAGAAGCTTTCAAGAAGGCTTGGCAAGTAGTATGTTCCTCTGGGGAAGCAAATCTTGTGGTGCCTCAAGAAAATTATCTACTCAAACCAATAAGATTCTCTGGTCCTTGCAAACCTAACATTGCGGTCCAGATTTCTGGAACTCTTGAAGCATCAAATGATCCATCAGATTATAGCGAAGACAACAGACACTGGCTTGTATTTGACAATATTCAAAAACTTTTAGTTCATGGTGGTGGAACCATCAATGGAAACGGCAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGCGCCCTTGCAAGGATGCCCCAACAGCTCTGACTTTCTATAATTGCGAGGAGTTGATAGTTGAGAATTTGAGGGTAGAAAATGCACAACAAATCCACGTTTCATTCCAGAACTCTGTGAATGTTAAGGTTTCTGGTCTCAATGTGACCGCACCAAAGGATAGTCCTAACACCGATGGGATTCATGTCACCAATACGCAAAACATTCAAATCTCAAGCTCTGTCATAGGAACTGGTGATGACTGTATATCAATCGTACATGGCTCAAGAAATGTAGTAGCCACGGACATAATCTGCGGACCCGGCCATGGTATTAGTATTGGAAGCTTAGGAGCCGGAAAATCCCAGGAATTTGTTTCTGGAATATTAGTGAATAGAGCTAAGATTTCTGGAACTACAAATGGAGTTAGGATTAAGACATGGCAGGGAGGCTCAGGAAGTGCTAGCAACATCCAATTTCAGAACATTGAAATGGACAATGTCACCAATCCCATAATAATAGATCAGAATTACTGTGACAAGAAAAACAAACCATGCAAAAAAGAGAACTCAGCGGTTCAAATTAAGAATGTGTTGTACGAGAACATAATTGGGACAAGTTCTTCTGATATAGCTGTGAAGTTTGATTGTAGTGAGAGTTTTCCATGCGAGGAGATAGTATTGCATAACATTGATCTCCAATGTGAAGGAGGATATGCTGCTGAGGCTTTATGTAACAATGTACAAGTGTCTTACTTGGGACATGTTAGCCCTCGTTGCAACACACAAAAAGAGAGAAAGACATCTACCACTACCTCCTTATGGAAAGACTCATGGTATATAATATGA 1398 0.4049 MALLKHLLVSFTIIISFVACYSSLQEDPLNGIYVDNSPSIDDIGGTFKNPIKQSTDIISSLYRFLDLGGTSSSIKMVNVNDYGAKGNGGEDDTEAFKKAWQVVCSSGEANLVVPQENYLLKPIRFSGPCKPNIAVQISGTLEASNDPSDYSEDNRHWLVFDNIQKLLVHGGGTINGNGNIWWQNSCKRNKKRPCKDAPTALTFYNCEELIVENLRVENAQQIHVSFQNSVNVKVSGLNVTAPKDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSRNVVATDIICGPGHGISIGSLGAGKSQEFVSGILVNRAKISGTTNGVRIKTWQGGSGSASNIQFQNIEMDNVTNPIIIDQNYCDKKNKPCKKENSAVQIKNVLYENIIGTSSSDIAVKFDCSESFPCEEIVLHNIDLQCEGGYAAEALCNNVQVSYLGHVSPRCNTQKERKTSTTTSLWKDSWYII* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1204 465 PANTHER ENDO POLYGALACTURONASE 7 449 - -
Apr4g1204 465 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Apr4g1204 465 Pfam Glycosyl hydrolases family 28 108 433 IPR000743 GO:0004650|GO:0005975
Apr4g1204 465 Gene3D - 69 463 IPR012334 -
Apr4g1204 465 PANTHER - 7 449 - -
Apr4g1204 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Apr4g1204 465 SUPERFAMILY Pectin lyase-like 74 450 IPR011050 -
Apr4g1204 465 SMART pbh1 279 299 IPR006626 -
Apr4g1204 465 SMART pbh1 309 330 IPR006626 -
Apr4g1204 465 SMART pbh1 229 255 IPR006626 -
Apr4g1204 465 SMART pbh1 256 277 IPR006626 -
Apr4g1204 465 SMART pbh1 338 359 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1204 Apr-Chr4 10588360 10591186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1204 59 445 Glycoside Hydrolase AT2G41850 57.286 1.21e-146 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1204 K01184 - gmx:100797601 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1204 4 10588360 10591186 Apr4g1204 4 10588360 10591186 ECH
Apr8g0827 8 8627738 8631005 Apr4g1204 4 10588360 10591186 PCT