Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0663 ATGAGAACAGGAAGCTGCGCCGTGCAACAAGGTCTAACCCCAGAGGCTGCAAGCATAGTGAAACAAGCAGTGACACTCGCGAAGCGTCGTGGCCACGCGCAAGTCACACCCCTCCACGTGGCAAACACCATGCTCGCCGTCACAAACGGGCTTCTTAGAAACGCGTGTCTTCAATCCAATTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCGCTGAATCGCTTACCAGCTTCAACTTCTTCGAGTCCCATGTTGCAAGGCTCTCACTACCACCACTCTCAGCCATGTCCTTCTATTTCAAACGCTTTGGTCGCTGCCTTCAAACGTGCTCAAGCTCACCAACGACGTGGATCCATCGAGAATCAGCAACAACCTCTTTTGGCAGTGAAGATTGAACTGGAGCAACTCATTATTTCCATCTTGGATGATCCTAGTGTTAGTAGAGTCATGAGAGAGGCTGGTTTTTCTAGTACTCAAGTGAAAAGCAACGTTGAACAAACCGTGTCTTTGGAAATATGCTCTCAGAATAATAATAGTAATAGTAATAGTAATAGTAATAATAATAATAATAAGGGGAAGGAGAATAATAGTAACCTCACTCTCTCTCATCATCAAGGTGGAGAGAACGTATCCAACAAAGGGTTGGTGTTGGATCAGATTAGGGGTGAGGATATTGCTAGTGTTATAGATAATTTGGGGAATCAAAGAAGGAGGAGTATTGTGATTGTGGGAGAGTGTGCGATTAGTCTCGAGGGTGTAGTCAAGGGTGTGATGGAAAAGGTTGATAAAGGGGATGTTGGTGAGTGTCTTAGGGGAGTTAAGTTTATATCTCTTTCTCTTTCTTCTTTTGGCCATGTTTCGAGATTGGAGGTTGAGCAAAAGGTTGAAGAGCTAAAGGGTCTTGCAAAGGGAACCTCTCATAACAAAGGGTATGTTTTGTATTTGGGAGATCTTAAGTGGGTGTTTGATCATAGGGCCCGGGGATCCCAAGGGAGAGCGTGTTATTGTCCTGTGGATCACATGGTAATGGAGATCGGGAAGCTGGTGAGTGGTGTTGGAGAGAATGGTGGAAGGTTTTGGATGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAGCCATCATTGGAAACTATTTGGGGTCTTCATCCTATTACTATCCCTGCAGGAAGCTTGCGCTTGAGTCTCATCACTGACAGTGAGATACAAAACCAGCCCACCAACAAGAAAGCTGACAATAGAACTAGCTGGCTATTACTCGAAGGAGTGGGAGATGATCAGAAACAACCAGCATGCTTCGCGGAACCTTCCACCAAGATTGAGACCGAAGTTCGAAGCTTGCAAAGCAGTGCTTGTAATAGTGATTCCTCAACTTCAACCCTTCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTATAATGATCAGAATTGCGTCCCAGTAGGAGAGCTATGCAAAAAGTGGAACTCTATGTGCAGTTCAATTCAAAATCAACCTTATCCTTCAGACAAAACCCTCACATTATCCTCAGTATCACCTTCTTCATCAACTTCTGGCTTCTCATACGAACAACAACACCCTAATTTGCACCAAACCCATCATGAGTGGCCAGTGGCATCACCAAAAGAGTCACTGTACAACCACCATTTCTGGATCTCTAACAATGGTAGCCACCCTAATGAACCCACTTTGCGAGTGTACGTCCCAGAGAACAAGGACACTAAGCAACCACAACCACTCTCATCATCGAATCCAAGTTCCAACCCTAACTCCGCTTCTTCTAGTGACATCATGGAAACAGATCACGTGAGCAGGTTCAAAGAGCTCAACTCAGAGAACTTGAAAACTATGTGCAATGCTTTGGAGAAAAAGGTGCCATGGCAGAAAGATATAGTGCCAGAAATTGCAAGCACCGTGTTGCAATGCCGTTCTGGCACGGTAAGAAGAAAAGGGAAAGTGAGAAGCAACGAGATAAAAGAAGAAACGTGGTTGTTTTTCCAAGGTGTTGATGTGAAAGCCAAAGAGAAAATAGCAAGAGAATTGGCTCGGCTTGTTTTTGGGTCCCAAAACGACGTCGTTTCCATAGCACTGAGCAGTTTTTCGTCAACAAGAGCAGATTCAACTGAGGATTATTGTCGGAACAAAAGATCAAGAGAAGAAACAAGTTGCAGTTACATTGAGAAGTTCGCTGATGCAATTTGTAATAATCCTCATAGGGTGTTTCTAGTTGAAGATATTGAGCAAGCAGATTATTGTTCTCATGTTGGTTTCAAAAGGGCCATTGAGAGAGGAAGAATTAAGGGTTCAAATGGTGAAGAGGTTGCACTTTGTGACGCTATCATCATTCTAAGCTGCGAGAGTTTCAGTTCAAGGTCAAGGGCTTGTTCTCCTTCGGTCAAACAAAAATCGTTGACTGAAGGAGAAAAGAATGACGAGGTTGCTACTTTGGAGGAGACAAGCCCTTTTCTTTCTTTGGATTTGAATATTTCCATTGATGATGAAAACGATGAGGATCGGTCGGTGGATGACATTGGCCTTCTTGAATCCGTAGACAGAAAGGTTATCTTCAACATTCAGGAATTGTGA 2625 0.4404 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLAVTNGLLRNACLQSNSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHYHHSQPCPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQTVSLEICSQNNNSNSNSNSNNNNNKGKENNSNLTLSHHQGGENVSNKGLVLDQIRGEDIASVIDNLGNQRRRSIVIVGECAISLEGVVKGVMEKVDKGDVGECLRGVKFISLSLSSFGHVSRLEVEQKVEELKGLAKGTSHNKGYVLYLGDLKWVFDHRARGSQGRACYCPVDHMVMEIGKLVSGVGENGGRFWMMGVATFQAYMRCKNGQPSLETIWGLHPITIPAGSLRLSLITDSEIQNQPTNKKADNRTSWLLLEGVGDDQKQPACFAEPSTKIETEVRSLQSSACNSDSSTSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQNQPYPSDKTLTLSSVSPSSSTSGFSYEQQHPNLHQTHHEWPVASPKESLYNHHFWISNNGSHPNEPTLRVYVPENKDTKQPQPLSSSNPSSNPNSASSSDIMETDHVSRFKELNSENLKTMCNALEKKVPWQKDIVPEIASTVLQCRSGTVRRKGKVRSNEIKEETWLFFQGVDVKAKEKIARELARLVFGSQNDVVSIALSSFSSTRADSTEDYCRNKRSREETSCSYIEKFADAICNNPHRVFLVEDIEQADYCSHVGFKRAIERGRIKGSNGEEVALCDAIIILSCESFSSRSRACSPSVKQKSLTEGEKNDEVATLEETSPFLSLDLNISIDDENDEDRSVDDIGLLESVDRKVIFNIQEL* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0663 874 Gene3D - 9 174 IPR036628 -
Apr8g0663 874 Pfam Clp amino terminal domain, pathogenicity island component 23 53 IPR004176 -
Apr8g0663 874 Pfam Clp amino terminal domain, pathogenicity island component 136 171 IPR004176 -
Apr8g0663 874 Gene3D - 222 391 IPR027417 -
Apr8g0663 874 MobiDBLite consensus disorder prediction 179 213 - -
Apr8g0663 874 PANTHER PROTEIN SMAX1-LIKE 3 1 873 - -
Apr8g0663 874 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 873 - -
Apr8g0663 874 MobiDBLite consensus disorder prediction 587 610 - -
Apr8g0663 874 Gene3D - 606 836 IPR027417 -
Apr8g0663 874 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Apr8g0663 874 MobiDBLite consensus disorder prediction 585 610 - -
Apr8g0663 874 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0663 Apr-Chr8 6178568 6182337 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0663 - - var:108320189 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0663 8 6178568 6182337 Apr10g2121 10 33873789 33879720 ECH
Apr8g0663 8 6178568 6182337 Apr8g0663 8 6178568 6182337 ECH