Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0661 ATGACTTCTCTTCACATATTGCCTCTACTCTGTCTCCTCTCTACCATCACCTTCACTTCATCATCCAACCCCAACACCATAACCATTCCTCTCTCTCCTCTATCCACCAAACACCCTTCTTCAGACCCATTCGAAACCCTCAAACTCCTAGCTTCTAACTCTATAACCAGAGCACATAACCTCAAAAACCACAAATCCCACGTCCTCAAAACCTCACTTCACCCAAAAAGTTATGGAGGATACTCCATTGACCTCAAATTCGGAACCCCCCCACAAACCTCCTCTTTCGTTTTGGACACTGGAAGCACCCTCGTTTGGCTCCCATGCTCCTCTCACTACCTATGCTCCAAATGCAACTCCTTCCCAAACACAACGCCCAATTTCATCCCCAAAAACTCTTCATCTTCGAAGCTCGTAGGTTGCACCAACCCCAAATGCGCGTGGGTTTTCGGCCCCAACGTTCAATCGCGTTGCCAAACCCAAAACTCCCGAACTTGCCCTCCTTACACCGTCCAATACGGCATGGGCTCAACCGCCGGTTTCTTACTCTCGGAAAATCTCAATTTTCCCGGGAAAACCGTCGCCGATTTTCTCCTCGGCTGCTCCATCGTGTCCATTTACCAACCCGCCGGAATCGCCGGGTTTGGTCGTGGCCCTGAGTCGGTGCCGTCGCAGATGAATCTCACGAGATTCTCCTACTGTTTACCGTCTCACCGGTTTGACGACTCGTCGGAGAGCAGCGACCTCGTCTTGCGAATTGGGTCCTCCGGCGACGGAAAAACTAACGGCGTCAGCTACACGCCGTTGGAGAAAAACCCGTCATCGACGAAGAATCCAGCTTTTGAGGTTTACTACTACCTTACCGTTAAGAAGATCGTGGTTGGAGAGAAGCGAGTGAGGGTTCCGAGGAGGTTATTGGAGATAGATGTCAACGGTAACGGTGGGTCCATTGTGGACTCGGGCTCAACCTTCACGTTCATGGAGAGGCCCATTTTCGATTTGGTGGCCCAAGAGTTTGAGAAGCAAGTGAATTACACAAGGGCTAGGGAGGTGGAGAAGGAATCGGGGTTGAGTCCGTGTTTTGTGGTGTCTGGAGGAGAAACGGCGTCGTTTCCGGGACTCACTTTTCAGTTCAGGGGTGGCGCCAAGATGAGGTTGCCGGCAACCAATTATTTTTCATTGGTGGAGAAATCTGACGTGGCGTGTTTGACCATCGTGTCTGATGACGTGGCGGGTCCCGGCGTGGCGGGTGGACCGGCTGTGATATTGGGGAACTATCAGCAGCAGAATTTCTACGTGGAGTTCGACTTGGAAAACCAGAGGTTTGGGTTTCGGACTCAGGGCTGCAAAACAAGCGTTTAG 1362 0.5154 MTSLHILPLLCLLSTITFTSSSNPNTITIPLSPLSTKHPSSDPFETLKLLASNSITRAHNLKNHKSHVLKTSLHPKSYGGYSIDLKFGTPPQTSSFVLDTGSTLVWLPCSSHYLCSKCNSFPNTTPNFIPKNSSSSKLVGCTNPKCAWVFGPNVQSRCQTQNSRTCPPYTVQYGMGSTAGFLLSENLNFPGKTVADFLLGCSIVSIYQPAGIAGFGRGPESVPSQMNLTRFSYCLPSHRFDDSSESSDLVLRIGSSGDGKTNGVSYTPLEKNPSSTKNPAFEVYYYLTVKKIVVGEKRVRVPRRLLEIDVNGNGGSIVDSGSTFTFMERPIFDLVAQEFEKQVNYTRAREVEKESGLSPCFVVSGGETASFPGLTFQFRGGAKMRLPATNYFSLVEKSDVACLTIVSDDVAGPGVAGGPAVILGNYQQQNFYVEFDLENQRFGFRTQGCKTSV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0661 453 PANTHER BNACNNG47670D PROTEIN 6 449 - -
Apr8g0661 453 Pfam Xylanase inhibitor N-terminal 81 250 IPR032861 -
Apr8g0661 453 Pfam Xylanase inhibitor C-terminal 285 445 IPR032799 -
Apr8g0661 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 96 107 IPR001969 GO:0004190|GO:0006508
Apr8g0661 453 Gene3D Acid Proteases 253 452 IPR021109 -
Apr8g0661 453 ProSiteProfiles Peptidase family A1 domain profile. 81 445 IPR033121 -
Apr8g0661 453 Gene3D Acid Proteases 56 248 IPR021109 -
Apr8g0661 453 CDD pepsin_A_like_plant 80 449 IPR034161 -
Apr8g0661 453 PANTHER OS07G0603500 PROTEIN-RELATED 6 449 - -
Apr8g0661 453 SUPERFAMILY Acid proteases 74 449 IPR021109 -
Apr8g0661 453 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Apr8g0661 453 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Apr8g0661 453 PRINTS Pepsin (A1) aspartic protease family signature 421 436 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0661 Apr-Chr8 6147170 6148569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0661 79 449 Miscellaneous Gene Families AT1G44130 24.812 2.61e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0661 - - gmx:100808552 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0661 8 6147170 6148569 Apr8g0661 8 6147170 6148569 ECH
Apr4g0371 4 3157117 3158891 Apr8g0661 8 6147170 6148569 PCT