Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0371 ATGGCTCCTCACATTCTCCTTTTACTCTCTCTACTCTCTCTAATCGCATGCACTTCTTCCAACCCCAACACCATCACTCTCCCTCTCTCCCCTTTATTCACAAAACCCCAATCCTCAGATCCATTCCACGCTTTCAAACTCGCCGCTTCAGCTTCTCTAACAAGGGCCCACCATCTCAAGCACCGCAATTCTTCATCCCTCACCACACAAGTCTTCCCCAAAAGCTACGGAGGATACTCCATAGATCTCAAATTCGGAACTCCACCCCAAACCTCTTCCTTCGTCTTGGACACTGGAAGCAGCCTCGTTTGGTTCCCCTGCACCTCTCGCTACCTCTGTTCCCACTGTCTCTTCCCAAACATCAACCCATCAACCATCTCCACCTTCATTCCCAAAAACTCTTCTTCTTCCAAGTTAGTCGGTTGCAGAAACCCCAAATGCGGTTACCTTTTCGGCAACGACGTTCAATCTCGATGCCCACAATGCAAACCCGCATCTCAAAACTGTACACTTACTTGCCCTGCTTACATCATCCAATACGGGTTGGGCTCCACCGCTGGTTTCTTACTCCTCGAAAATCTCAATTTTCCGGGAAAAATTGTAACTGATTTTCTCGTCGGCTGTTCCATCCTCTCCGTCCGGCAACCCTCCGGGATCGCCGGATTCGGACGTGGGAAAGAGTCGCTTCCGTCGCAGATGGGTCTCAAGAGATTCTCCTACTGCTTAATTTCCCACCGGTTCGACGACTCGCGGGAAAACAGCGACCTCATTTTGCAGATTGGCTCCACCGGCGACGCCAAAACCACCGGCCTGAGTTACACGCCGTTTCACAAGAACCCGTCCGGGAACAACTCGGCATTCGGCGAGTATTACTATTTGAACCTTCGCAAGGTCATTGTCGGCGGCGAGAGAGTGAAGATTCCGTTGGAGTTTTTGGAATCAGGTTCTGACGGTAATGGGGGAACCATCGTGGACTCTGGGAGTACCTTCACGTTCATGGAGAGGCCCGTTTATAATTTGGTGGCCCAAAAGTTCGAGAAGCAAATGGCGAATTACACGCGGGCCAAGGACGTGGAGGCCCAATCGGGATTGGGGCCGTGTTTTAATTTATCCGGCGTGACGACGGCGAGTTTCCCGGAGTTAACTTTTCAGTTCAAAGGCGGCGCCAAAATGACGTTGCCGCTTCCTAATTATTTCTCGTTGGTGGGCGATTCGAAGGTGGTGTGTTTGATCATTGTCACCGGCGGAGGTACCGGTCCTTCGAGGGCATCCGGTCCGGCGATCATCTTGGGGAACTATCAGCAGCAGAATTTCTACGTTGAATTTGATTTGGAGAATGAGAGGTTCGGATTTCGGCCTAAGAGTTGCAAAAGGAGTGCTTAG 1383 0.5112 MAPHILLLLSLLSLIACTSSNPNTITLPLSPLFTKPQSSDPFHAFKLAASASLTRAHHLKHRNSSSLTTQVFPKSYGGYSIDLKFGTPPQTSSFVLDTGSSLVWFPCTSRYLCSHCLFPNINPSTISTFIPKNSSSSKLVGCRNPKCGYLFGNDVQSRCPQCKPASQNCTLTCPAYIIQYGLGSTAGFLLLENLNFPGKIVTDFLVGCSILSVRQPSGIAGFGRGKESLPSQMGLKRFSYCLISHRFDDSRENSDLILQIGSTGDAKTTGLSYTPFHKNPSGNNSAFGEYYYLNLRKVIVGGERVKIPLEFLESGSDGNGGTIVDSGSTFTFMERPVYNLVAQKFEKQMANYTRAKDVEAQSGLGPCFNLSGVTTASFPELTFQFKGGAKMTLPLPNYFSLVGDSKVVCLIIVTGGGTGPSRASGPAIILGNYQQQNFYVEFDLENERFGFRPKSCKRSA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0371 460 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Apr4g0371 460 PRINTS Pepsin (A1) aspartic protease family signature 322 333 IPR001461 GO:0004190|GO:0006508
Apr4g0371 460 PRINTS Pepsin (A1) aspartic protease family signature 428 443 IPR001461 GO:0004190|GO:0006508
Apr4g0371 460 ProSiteProfiles Peptidase family A1 domain profile. 79 452 IPR033121 -
Apr4g0371 460 Gene3D Acid Proteases 61 257 IPR021109 -
Apr4g0371 460 Gene3D Acid Proteases 259 460 IPR021109 -
Apr4g0371 460 CDD pepsin_A_like_plant 78 456 IPR034161 -
Apr4g0371 460 PANTHER BNACNNG47670D PROTEIN 5 456 - -
Apr4g0371 460 Pfam Xylanase inhibitor C-terminal 291 452 IPR032799 -
Apr4g0371 460 PANTHER OS07G0603500 PROTEIN-RELATED 5 456 - -
Apr4g0371 460 Pfam Xylanase inhibitor N-terminal 79 257 IPR032861 -
Apr4g0371 460 SUPERFAMILY Acid proteases 75 456 IPR021109 -
Apr4g0371 460 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 94 105 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0371 Apr-Chr4 3157117 3158891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0371 67 458 Miscellaneous Gene Families AT1G44130 24.122 9.38e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0371 - - gmx:100805927 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0371 4 3157117 3158891 Apr4g0371 4 3157117 3158891 ECH
Apr4g0371 4 3157117 3158891 Apr8g0661 8 6147170 6148569 PCT