Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0573 ATGGGGGCGTCGCTGTCGAACCTAAGCACCAACGGTTCGAGCCTCGGTCCTAGCCTCGGGGACATACCTGAGGCTTGTGTGGCCTGCGTTTTCCTCTACCTGACGCCGCCGGAGATTTGCAACCTCGCGCGCCTCAACCGCGCGTTTCGAGGCGCTGCTTCGTCGGATTCCGTTTGGGAAGCAAAGTTGCCGCGTAACTACCAAGATCTGCTGGATCTGGTGCCGCCGGAGCGCCACCAGAATCTCTCGAAGAAGGACATTTTCGCGCTCTTATCGAGGCCGTTACCCTTCCACGACGGCCATAAGGAAGTGTGGCTGGACAGGGTCACGGGAAGAGTTTGCATGTCAATTTCGGCGAAGGCGATGGCGATTACTGGGATTGATGATCGGAGATACTGGAATTGGATTCCTACTGAAGAATCTAGGTTTCACACCGTGGCATATTTGCAGCAAATCTGGTGGTTTGAAGTGGATGGGGAGGTAACATTTCCATTTCCTGCTGATATTTATACTATCTTCTTTAGGCTTCACGTTGGACGGTTTTCCAAAAGGCTTGGACGACGTGTATGCAATTATGAACACACCCATGGTTGGGATATAAAACCTGTGAAATTTGAGTTGACCACTTCAGATAGTCAGCATGCGTCTTGTGAATGCTGTTTGGATGAAACTGAGCTTGATGATACATATGGCTACCGTAAGCGTGGATACTGGGTGGATTACAAAGTGGGTGAGTTTATTGTCAGTGGATCTGAGCCAACAACACAAGTTAGGTTTTCCATGAAACAGATTGATTGTACACATTCTAAAGGTGGACTTTGTGTAGATTCTGTATTTATTTTACCTAATGATTTGAGAGCGCGCAAGAGAAGAGGCATTTTGAAATAG 888 0.4842 MGASLSNLSTNGSSLGPSLGDIPEACVACVFLYLTPPEICNLARLNRAFRGAASSDSVWEAKLPRNYQDLLDLVPPERHQNLSKKDIFALLSRPLPFHDGHKEVWLDRVTGRVCMSISAKAMAITGIDDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTIFFRLHVGRFSKRLGRRVCNYEHTHGWDIKPVKFELTTSDSQHASCECCLDETELDDTYGYRKRGYWVDYKVGEFIVSGSEPTTQVRFSMKQIDCTHSKGGLCVDSVFILPNDLRARKRRGILK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0573 295 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Apr8g0573 295 PANTHER F-BOX PROTEIN PP2-A15 1 291 - -
Apr8g0573 295 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 291 - -
Apr8g0573 295 Pfam Phloem protein 2 113 282 IPR025886 -
Apr8g0573 295 SUPERFAMILY F-box domain 17 85 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0573 Apr-Chr8 5124481 5129778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0573 - - vra:106772440 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0573 8 5124481 5129778 Apr8g0573 8 5124481 5129778 ECH
Apr4g0271 4 2270075 2274650 Apr8g0573 8 5124481 5129778 PCT