Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0562 ATGCGGTGTTGCATTTTGATGTTGTTGGCCGTAACCGCCGTGCTGCTGTCGGTGGTGTGCGGTGGTTTCCTCCCTCTGGAACGGAGCATTCCTCTCAGCCACCGTGTGGAGGTGGAGGCCCTCAGAGCTCGCGACAGAGCTCGCCACGCTCGAATCTTGCGCGGCGTGGTTGGCGGCGTCGTCGATTTCTCAGTCCAAGGCACCTCCGATCCATACTCCGTTGGGTACGGGTTGTATTTCACCAAAGTGAAGATGGGATCTCCTCCTAGAGAATTTAACGTTCAGATTGATACGGGGAGTGATATTTTGTGGGTTAATTGCAATACATGTAGTAATTGCCCTCAGTCTAGTGGACTAGGGATTGAGCTCAATTTCTTTGACACGGTTGGGTCTTCCACAGCTGTGTTGGTTCCTTGCTCGGACCCAGTATGCACTTCTGGGGTGCAGGGTGCTGCAGCTGAGTGCTCATCTCAGGTTAATCAGTGCAGCTACACGTTTCAGTATGGAGACGGGAGTGGTACATCGGGTTATTATGTTTCTGATGCAATGCATTTTGACATGATCATGGGACAGTCTCCGCCGGCTAATTCTTCGGCTACCATTGTTTTTGGGTGTAGTACCTATCAGTCGGGCGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGGCCTGGTGCTCTGTCTGTTGTATCGCAATTGTCCTCACGAGGAATTAGACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTAGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACTCCTCCCGATTAATCCAGCTGTATTTGCAACATCTAACAACCGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTTAACGCAATAACTACTGCTGTATCACAATCTGCTAGGCCCATTATTTCCAAAGGAAGCCAGTGTTATCTGGTTGCAATCAGTATAGGTGACATGTTTCCATCAGTCAGTTTAAACTTTGCGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATTATGGTTACCTTGATGGTGCTGCAATGTGGTGCATCGGTTTCCAGAAAGTTCAGGAGGGAGTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTACGACTTAGCTCATCAACGAATTGGATGGACAAACTATGATTGTTCCTTGTCTGTAAACGTTTCTGTGACTACTAGCAAGGATGAGTACATCAATGCAGGACAGCTAAATGTCAGCAGCTCTGACATACGCATTCTTTCTAAGTTTCTGCCTGTTAGCATTGTGGCGCTCTCTATGTACATAATGTCGGTATGA 1461 0.462 MRCCILMLLAVTAVLLSVVCGGFLPLERSIPLSHRVEVEALRARDRARHARILRGVVGGVVDFSVQGTSDPYSVGYGLYFTKVKMGSPPREFNVQIDTGSDILWVNCNTCSNCPQSSGLGIELNFFDTVGSSTAVLVPCSDPVCTSGVQGAAAECSSQVNQCSYTFQYGDGSGTSGYYVSDAMHFDMIMGQSPPANSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGIRPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINPAVFATSNNRGTIVDCGTTLAYLVQEAYDPLVNAITTAVSQSARPIISKGSQCYLVAISIGDMFPSVSLNFAGGASMVLKPEQYLMHYGYLDGAAMWCIGFQKVQEGVTILGDLVLKDKIVVYDLAHQRIGWTNYDCSLSVNVSVTTSKDEYINAGQLNVSSSDIRILSKFLPVSIVALSMYIMSV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0562 486 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Apr8g0562 486 SUPERFAMILY Acid proteases 74 440 IPR021109 -
Apr8g0562 486 CDD pepsin_A_like_plant 79 437 IPR034161 -
Apr8g0562 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 455 - -
Apr8g0562 486 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Apr8g0562 486 Gene3D Acid Proteases 266 444 IPR021109 -
Apr8g0562 486 Gene3D Acid Proteases 62 265 IPR021109 -
Apr8g0562 486 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Apr8g0562 486 PANTHER ASPARTYL PROTEASES 8 455 IPR001461 GO:0004190|GO:0006508
Apr8g0562 486 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Apr8g0562 486 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Apr8g0562 486 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0562 Apr-Chr8 5010054 5014355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0562 77 438 Miscellaneous Gene Families AT1G44130 27.415 9.03e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0562 - - gmx:100820394 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0562 8 5010054 5014355 Apr8g0562 8 5010054 5014355 ECH
Apr4g0259 4 2182809 2188533 Apr8g0562 8 5010054 5014355 PCT