Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0259 ATGCGGGGTGGTGTTCCCGTGCTGTTTGCGTTAGCCACCGTGGTGGTGCCGGCGACGGTGGTTCTCGGCGGTTTGGCGGCGACTTTTCTTCCTCTGGAACGGGCCATTCCTCTGAACCAGCAAGTTGAACTTGGGACACTGAGAGCTCGCGACAGAGCACGGCACGGTCGAATCTTGCAGGGCGTCGTTGGTGGCGTTGTCGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTTGTATTTCACGAAAGTGAAGTTGGGATCACCTGCAAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGCTAAACTGCATGACTTGCAGTAATTGCCCGCAATCTAGTGGGTTGGGGATTCAGCTCAATTTCTTTGACACGGCCAGCTCATCCACTGCTGCGCAGGTTTCGTGCTCGGACCCGATATGTTCTTATGCGGTTCGAACTGCGACGAGTGAATGCTCTTCTCAGGCCAATCAATGCACCTACACCTATCAGTATGGGGATGGAAGTGGGACATCTGGTTATTATGTTTCTGATACGATGTATTTTGACATGATCCTGGGGCAGTCTGTGTTTTCTAACTCATCTACCATTGTTTTTGGGTGTAGTTCCTATCAGGCTGGGGATTTGACTAGGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTTTATCTGTCATATCACAACTGTCATCACAGAGTGTAACACCCAAAGTGTTCTCTCATTGCTTAAAAGGACAGGACAATGGAGGAGGCATACTAGTTCTTGGTGAAATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCGCAGCCTCATTACAATTTAAATCTTCAGAGCATTGCTGTGAATGGACAACTTCTCTCAATTGATCCAGATGTATTTGCAACAGCTAACAATCGAGGAACTATAGTTGACTCTGGTACAACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTGTCGATGCTATAACCACCGCTGTCTCACAGTTTTCAAAACCCATTATTTCAAAAGGAAACCAGTGCTATCTGGTCTCAAACAGTGTAGGTGATATATTTCCTTCTGTGAGTTTAAACTTCATGGGTGGGGCATCCATGGTTTTAAATCCAGAACATTACCTCATGCATTATGGTTTCCAAGATGGAGCTGCAATGTGGTGCATTGGCTTCCAGAAAGTGGAGGAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATTTTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCCAATTATGATTGTTCCCTGGCTGTAAATGTCTCTGTGGCCACGAGCAAGAGCAAGGATGCATATATCAATGCAGGACAGATGAGTGTCAGCTGTTCCCACATAGGCTCTTTCTCCAAGTTGCTAACTGCCAGCATTGTTGCTTTCCTTGTGCACATAATAGTTTTCATGGAGTCCCAATTTTCGTAA 1494 0.4531 MRGGVPVLFALATVVVPATVVLGGLAATFLPLERAIPLNQQVELGTLRARDRARHGRILQGVVGGVVDFSVQGTSDPYFVGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCMTCSNCPQSSGLGIQLNFFDTASSSTAAQVSCSDPICSYAVRTATSECSSQANQCTYTYQYGDGSGTSGYYVSDTMYFDMILGQSVFSNSSTIVFGCSSYQAGDLTRTDKAVDGIFGFGPGALSVISQLSSQSVTPKVFSHCLKGQDNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLSIDPDVFATANNRGTIVDSGTTLAYLVQEAYDPFVDAITTAVSQFSKPIISKGNQCYLVSNSVGDIFPSVSLNFMGGASMVLNPEHYLMHYGFQDGAAMWCIGFQKVEEGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSVATSKSKDAYINAGQMSVSCSHIGSFSKLLTASIVAFLVHIIVFMESQFS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0259 497 CDD pepsin_A_like_plant 83 440 IPR034161 -
Apr4g0259 497 Gene3D Acid Proteases 269 446 IPR021109 -
Apr4g0259 497 ProSiteProfiles Peptidase family A1 domain profile. 83 436 IPR033121 -
Apr4g0259 497 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Apr4g0259 497 PANTHER ASPARTYL PROTEASES 5 459 IPR001461 GO:0004190|GO:0006508
Apr4g0259 497 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Apr4g0259 497 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Apr4g0259 497 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Apr4g0259 497 Pfam Xylanase inhibitor N-terminal 83 267 IPR032861 -
Apr4g0259 497 SUPERFAMILY Acid proteases 78 442 IPR021109 -
Apr4g0259 497 Gene3D Acid Proteases 67 268 IPR021109 -
Apr4g0259 497 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0259 Apr-Chr4 2182809 2188533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0259 67 441 Miscellaneous Gene Families AT1G44130 26.650 2.63e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0259 - - gmx:100804147 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0259 4 2182809 2188533 Apr4g0259 4 2182809 2188533 ECH
Apr4g0259 4 2182809 2188533 Apr8g0562 8 5010054 5014355 PCT