Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0419 ATGGAGTCGCTCTCTAAAATGCACCATTCTCACCTCTCACTCGCTCACCACAATTCTTCATTTCCAACAGTATTTTCTCCTCGCTTCTTCCGCTCTCTACCGCTACCTCCATTCTCTCCTCCATCATTCAAATCATTTTCTATCAGAGCCTCATCAACACCGTTACCAAAAGCCCACCTCCGACAAACCCTAAATCCTCATTTCTCACCTCTAGTCAAATCCACTTGCATCGCCATCGCCGCAACCGCATTCTTCTTCACCCGCCTACAGCTCAACACCGCCACGGCGGCGCCGGTTCTTCCTCCTTCGGATTCCTCCGTGTCGGAAACTCTCCCGAGCGCCGTCGAAGAGCAGCAACCGAGCAACAACCTCGACGAAGCCGACGCGCTTCGTTCCCTGACGGAGGAAAAGATCAGAGCTGGCGAAATCGACGAAGCGATTCGCGTTCTGGAGCGTTTGATCTCGCTGGAACCGGAGGAGTTGGAATGGCTACTGCTGAAGGCGCACTTGTACATCCACAACGGCGAACACAAACTTGCCTTGAACGTGTTCGAAAGTGTGCTTAAGAAGGAACCGTTTAACGTTGAAGCTTATCGTGGCTTTCTAATGGCTAATTCGGAATTGAACGAGCCAAGTGAGGAATTGTTGAAGAGGATCGAAGAAGCGGTTAGGGTTTGCGAGGAGGAAGAGATGGATTCAGAGGTTAGGGACTTTAAGCTTTTGATTGCGCAGATAAAGGTTATTGATGGGGAATTATCTGATGCGCTGAAGGTGTATGAAGAGCTTGTGAAGGAAGAACCCAAGGATTTTAGACCTTACTTGTGTCAGGGTATTGTTTATACTATGCTGAGGAAGCAAGATGAAGCTGAGAAACAGTTTGAGAAGTACCGAACACTTGTTCCTCAAGATCATCCTTATAAAGAGTATTTTGAGGATAATACTAAGATTTTCTCGCAGAGCCTAGAGAGTGGAGGAATAGGTGCAAAGAGCTGA 993 0.4804 MESLSKMHHSHLSLAHHNSSFPTVFSPRFFRSLPLPPFSPPSFKSFSIRASSTPLPKAHLRQTLNPHFSPLVKSTCIAIAATAFFFTRLQLNTATAAPVLPPSDSSVSETLPSAVEEQQPSNNLDEADALRSLTEEKIRAGEIDEAIRVLERLISLEPEELEWLLLKAHLYIHNGEHKLALNVFESVLKKEPFNVEAYRGFLMANSELNEPSEELLKRIEEAVRVCEEEEMDSEVRDFKLLIAQIKVIDGELSDALKVYEELVKEEPKDFRPYLCQGIVYTMLRKQDEAEKQFEKYRTLVPQDHPYKEYFEDNTKIFSQSLESGGIGAKS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0419 330 MobiDBLite consensus disorder prediction 100 122 - -
Apr8g0419 330 Coils Coil 212 232 - -
Apr8g0419 330 Pfam Tetratricopeptide repeat 139 201 - -
Apr8g0419 330 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 323 - -
Apr8g0419 330 Gene3D Tetratricopeptide repeat domain 80 312 IPR011990 GO:0005515
Apr8g0419 330 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Apr8g0419 330 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 323 - -
Apr8g0419 330 SUPERFAMILY TPR-like 127 304 IPR011990 GO:0005515
Apr8g0419 330 SMART tpr_5 127 160 IPR019734 GO:0005515
Apr8g0419 330 SMART tpr_5 236 269 IPR019734 GO:0005515
Apr8g0419 330 SMART tpr_5 270 303 IPR019734 GO:0005515
Apr8g0419 330 SMART tpr_5 161 194 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0419 Apr-Chr8 3578888 3579880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0419 - - cam:101497721 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0132 4 1129726 1133065 Apr8g0419 8 3578888 3579880 PCT