Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0132 ATGGACACTCTTCCCAAATTGCGTCACTCTAACCTATCTCTAAATCACCACCGTTCATCATTCCCACTCCCCTTATCATCTTCACTCTCCTTCAGGTCCCTTCCGCCACCGCACTCTCCGTCATCCACGTTTAGGTTTCCGTCCATCAAAGCCTCCTCATCGCCGTCACCGTCAACTAACGACCCCGCGTTTCCCAAACCAATCAACGTTCCCTCACTCCCCCCTCTCCTCCAAGCCCTAAGCCCTATTTTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATTGCCGCCACCGCGTTCTTCTTCATGCGCTTCCACCACAATCCTGTAATCGCCGCGCCGCTCTCTCCGCCCACGGTGGAGTCCTCACCGGAATTTGCCTCCAGCGAAGAAGCTGAGAGGGTTCTGGAAGAGCGATTGAGCAGTAACCCTGGCGACAAAGAAGCGCTTCAAGCTCTCATGGAGTGCAAGATCAGAGCGCGCAATGTTGACGGAGCGATTGAGGTTCTGGACCGTTTGATTGAGCTCGAACCGGAAGAGTGGGAATGGCCTCTGCTGAAAGCCAACATGTACATCTACAATGGTGACAACGAGCGCGCGAGGATTTTGTTCGAAGATATCTTGAAGAGAGATCCACTTCGCGTGGAAGCGTTTCACGGCCTCGTGATGGCTAGTTCGGAATCGAACGAGTCGTTGAAGGGGGTGTTGAAGAGGGTTGAACAAGCGGTGGAGAATTGCAAGAAGCAGAAGAAGGATTCGGACGTGAGAGATTTCAAGCTCTTGATTGCGCAGATCAAAGTGATGGAGGGGAATTTTTCTGAGGCTCTGAAAGCCTACCAGGAACTGGTGAAGGAAGAACCAAGAGATTTTAGGCCTTATCTGTGTCAGGGTATTATATATACTCTGCTGAAAAAGAACGATGAAGCTGAGAAGCAATTCAATAAGTTTCGCAGGCTTGTTCCTAAGGATCATCCTTATAAAGAGTATCTCGAGGATAATATGTTTGCAAGCAAGTTTTTCTCGCAGAAATTGGAGAGGGAGGGAGCAGGTGCAAGGGGCTGA 1062 0.5075 MDTLPKLRHSNLSLNHHRSSFPLPLSSSLSFRSLPPPHSPSSTFRFPSIKASSSPSPSTNDPAFPKPINVPSLPPLLQALSPIFSPVVETTCIVIAATAFFFMRFHHNPVIAAPLSPPTVESSPEFASSEEAERVLEERLSSNPGDKEALQALMECKIRARNVDGAIEVLDRLIELEPEEWEWPLLKANMYIYNGDNERARILFEDILKRDPLRVEAFHGLVMASSESNESLKGVLKRVEQAVENCKKQKKDSDVRDFKLLIAQIKVMEGNFSEALKAYQELVKEEPRDFRPYLCQGIIYTLLKKNDEAEKQFNKFRRLVPKDHPYKEYLEDNMFASKFFSQKLEREGAGARG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0132 353 Pfam Tetratricopeptide repeat 265 323 - -
Apr4g0132 353 Coils Coil 229 256 - -
Apr4g0132 353 MobiDBLite consensus disorder prediction 42 59 - -
Apr4g0132 353 SMART tpr_5 256 289 IPR019734 GO:0005515
Apr4g0132 353 SMART tpr_5 290 323 IPR019734 GO:0005515
Apr4g0132 353 Pfam Tetratricopeptide repeat 130 179 - -
Apr4g0132 353 Gene3D Tetratricopeptide repeat domain 120 340 IPR011990 GO:0005515
Apr4g0132 353 MobiDBLite consensus disorder prediction 42 66 - -
Apr4g0132 353 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 346 - -
Apr4g0132 353 SUPERFAMILY TPR-like 130 323 IPR011990 GO:0005515
Apr4g0132 353 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 346 - -
Apr4g0132 353 ProSiteProfiles TPR repeat profile. 256 289 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0132 Apr-Chr4 1129726 1133065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0132 - - gmx:102661172 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0132 4 1129726 1133065 Apr8g0419 8 3578888 3579880 PCT