Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0287 ATGATTCTGAGGAATCTAGAATTGCAGGGTACAGAGGTAAGTACCCCTTTAGAAAGAAATGGATTCAACCAAGATAAAAGACAACAGCAGGGAGCTCAGCAGAAAGAGTTATCCTCTGTGGGTCGAGATAAGAATATACATGTCTATTCACAGAGAATGTCAAAAAAGAATATTAAAGTGACAAATAAGGTTCAAGAGATTAAGGATCAAATTATTTTAGCCAAAGCATACTTGAAAATTGCACCACCAAGCAGAAATGCGCGCTTGAAGCAGTTGGAGCTGCAAATGACGGAGATGGAACAAGCAATTGGAGAAGTCACCCAGGATTCAGATTTGTCAGGGAGTGCTTTGCAGAAAATGCAACACTTGGAGGCTTCACTGTCCAGAGTCAGTCGTGCTTTCCCTGACTGCTCTGCTATTGCTGCTAAGCTCAATGCAATGAAGCGTAACACTGAAGTGCAAGTCCATTCTCAGCGACATCAAGTTGCATATCTTGTTCATCTTGCTGCAAGGACCGCCCCAAAAGGCATTCACTGTCTTTCTATGCGGCTGACTGCAGAATACTTTGCCCAAAAGCCTGAGGAGAGAGAGCTTCCAGATGAAAATAAGATTCATCATCCAGACCTTTATCATTATGCTGTCTTCTCTGACAATGTCCTGGCATGTGCAGTGGTTGTTAACTCTACTGTCTCTACTGCCAAGGAACAGGAGAAACTTGTTTTCCATGTACTGACCCAATCACACAACTTGCCCGCAATCTCAATGTGGTTCTTAATAAACCCTCCTGGCAAAGCTACAGTACACATACAGAGCATAGACAACTTTGAATGGTTGTCCAAGTACAATACCTTCCTTAGAAATAATTCCAGCAATCCGGGATACATGTCGGAATTGAACTACCTGCGTTTCTACCTGCCCGACATTTTTCCTGCTCTAAATAAGATTGTGCTCTTTGACCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGTCAATATGAAGGAAAATGTAATTGGAGCAGTTGGAACTTGTCAGGAAGGAAAAATCCCATTTCATAGGATTGATATGTTCATAAACTTCTCAGATCCATTAATTGGAGAGAAATTCGACGTCAATGTTTGCACATGGGCGTTTGGGATGAACTTGATTGATTTGCAACAGTGGAGGCAGCATCATTTAACTAATGCCTTTCACAGATATTTGCAAATGGGTTTGTGGGACGTTGGAAGTCTACCTTTAGGCTGGCTCACCTTCTATAACAAGACAATGTTGTTGGACAGACAATGGCATGTTCTTGGCCTTGGTCATAACTCGGGTGTTGATCGAAGTGAAATTGAGCGGGCTGCTGTTATACACTATGATGGGATTAGGAAGCCATGGTTGGATATTGCTATGGGCAGATATAAAAGTTATTGGACCAAATTTTTGAATTTTGACCACCCATTTTTGCAACAGTGCAATATCCAGGCATAG 1482 0.4204 MILRNLELQGTEVSTPLERNGFNQDKRQQQGAQQKELSSVGRDKNIHVYSQRMSKKNIKVTNKVQEIKDQIILAKAYLKIAPPSRNARLKQLELQMTEMEQAIGEVTQDSDLSGSALQKMQHLEASLSRVSRAFPDCSAIAAKLNAMKRNTEVQVHSQRHQVAYLVHLAARTAPKGIHCLSMRLTAEYFAQKPEERELPDENKIHHPDLYHYAVFSDNVLACAVVVNSTVSTAKEQEKLVFHVLTQSHNLPAISMWFLINPPGKATVHIQSIDNFEWLSKYNTFLRNNSSNPGYMSELNYLRFYLPDIFPALNKIVLFDHDVVVQQDLSGLWNVNMKENVIGAVGTCQEGKIPFHRIDMFINFSDPLIGEKFDVNVCTWAFGMNLIDLQQWRQHHLTNAFHRYLQMGLWDVGSLPLGWLTFYNKTMLLDRQWHVLGLGHNSGVDRSEIERAAVIHYDGIRKPWLDIAMGRYKSYWTKFLNFDHPFLQQCNIQA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0287 493 MobiDBLite consensus disorder prediction 14 45 - -
Apr8g0287 493 Coils Coil 89 109 - -
Apr8g0287 493 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 201 483 IPR029044 -
Apr8g0287 493 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 14 492 IPR029993 GO:0047262
Apr8g0287 493 PANTHER HEXOSYLTRANSFERASE 14 492 - -
Apr8g0287 493 SUPERFAMILY Nucleotide-diphospho-sugar transferases 210 491 IPR029044 -
Apr8g0287 493 Pfam Glycosyl transferase family 8 179 467 IPR002495 GO:0016757
Apr8g0287 493 MobiDBLite consensus disorder prediction 14 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0287 Apr-Chr8 2397026 2401948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0287 63 493 Glycosyltransferase AT1G06780 54.566 1.44e-177 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0287 K13648 - gmx:100819255 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0287 8 2397026 2401948 Apr8g0287 8 2397026 2401948 ECH
Apr4g1014 4 8332942 8340103 Apr8g0287 8 2397026 2401948 PCT