Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0246 ATGGGTTTTAGAGGGTTTGTCCTGTGTCTAGTTGGGGTGCTGGTGGCCACTATGTGGGCTCAAAATGCAGCCCAACCAGGCTCAGGTTGCACCAGTGCACTCACTGGGTTAAGCCCATGTCTGAACTACATAACGGGAAGTTCCACAACGCCATCAGCTTCATGTTGCTCACAGCTCTCTAGTGTAGTTCAATCTTCGCCACAGTGTCTCTGCTCTGTGCTTAATGGTGGGGGTGCCACTTTTGGAATTACCATAAATCAAACGCTTGCTCTGTCTCTCCCTGCCGCTTGTAAAGTGCAAACTCCCCCTGCTAGTCAATGCAAAGCCGGCAATGGAGCAACACCTCCATCGTCAGCACCAGTTGGTTCACCATCTGATTCTTCAGCTGAATCACCCGATGGCTCAATTACACCTTCTGCTTCAGATTTTCCCTCAGGAGGTGGAGGATCTAAAACTGTCCCATCAACAAACGGTGGTTCATCCGGTGGAGGTACTAATAGAGTCCCTTCACACTTGGTGCTCTATCTTCTTGCAATTGTGTCTTGTGTCTCCACCTTCACGATGTTCTGA 570 0.4965 MGFRGFVLCLVGVLVATMWAQNAAQPGSGCTSALTGLSPCLNYITGSSTTPSASCCSQLSSVVQSSPQCLCSVLNGGGATFGITINQTLALSLPAACKVQTPPASQCKAGNGATPPSSAPVGSPSDSSAESPDGSITPSASDFPSGGGGSKTVPSTNGGSSGGGTNRVPSHLVLYLLAIVSCVSTFTMF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0246 189 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Apr8g0246 189 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Apr8g0246 189 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Apr8g0246 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 184 - -
Apr8g0246 189 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 108 IPR036312 -
Apr8g0246 189 Gene3D - 28 107 IPR036312 -
Apr8g0246 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 184 IPR043325 -
Apr8g0246 189 MobiDBLite consensus disorder prediction 106 164 - -
Apr8g0246 189 SMART aai_6 30 107 IPR016140 -
Apr8g0246 189 Pfam Probable lipid transfer 14 107 IPR016140 -
Apr8g0246 189 CDD AAI_LTSS 37 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0246 Apr-Chr8 1931985 1933145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0246 1 186 Acyl Lipid Metabolism Gene Families AT2G48130 46.316 7.25e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0246 - - gmx:100306151 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0246 8 1931985 1933145 Apr8g0246 8 1931985 1933145 ECH
Apr8g0246 8 1931985 1933145 Apr4g1050 4 8705697 8707058 PCT