Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1050 ATGGCACCCAGAAGAGGGATTGAAATGCTGTTGAGCATGTCCCTTGTGGTGGCTCTTTTGGGAGCCACATTGGCTCAATCCGAATCAAGTTGCACCAATGTGCTCTTAAGCCTTTCTCCTTGCCTTGACTACATAACAGGAAATGCCTCTACCCCTTCATCTGTTTGCTGTTCTCAACTTGGCTTTGTGGTGAGAACACAGCCACTTTGTCTATGTGAGGTTGTTAACAGTGGTGCCTCATCCATTGCTGCCAGTCTCAACATCAATCAGACTAAGGCCTTGCTACTTCCTAGTGCTTGCAACGTTCAAACACCACCTATTAGCACCTGCAGTGGCTCAGCTTCTTCCTCATCAGGTGTTTCTGTTTCCAACATTCCAAATTCCCCTTCAGGGATTGGATCCAATACCTATTCATCAACGACCGGAGGCAGTAGAAGTGTCGGTGGTTCATATCATGAAAATTCAAGTTCCACTACGTTGCCTTGTTCTTTGCTTCTATTATTTCTCTTTGCTACGACTTTGACTTTCTCATTCAAGACCGCCACCTAG 549 0.459 MAPRRGIEMLLSMSLVVALLGATLAQSESSCTNVLLSLSPCLDYITGNASTPSSVCCSQLGFVVRTQPLCLCEVVNSGASSIAASLNINQTKALLLPSACNVQTPPISTCSGSASSSSGVSVSNIPNSPSGIGSNTYSSTTGGSRSVGGSYHENSSSTTLPCSLLLLFLFATTLTFSFKTAT* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1050 182 MobiDBLite consensus disorder prediction 131 150 - -
Apr4g1050 182 Pfam Probable lipid transfer 13 110 IPR016140 -
Apr4g1050 182 Gene3D - 28 108 IPR036312 -
Apr4g1050 182 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 112 IPR036312 -
Apr4g1050 182 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 180 IPR043325 -
Apr4g1050 182 SMART aai_6 31 110 IPR016140 -
Apr4g1050 182 CDD AAI_LTSS 38 102 - -
Apr4g1050 182 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Apr4g1050 182 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Apr4g1050 182 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Apr4g1050 182 PANTHER LIPID TRANSFER PROTEIN 6 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1050 Apr-Chr4 8705697 8707058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1050 7 111 Lipid Metabolism Gene Families AT3G22600 50.943 1.10e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1050 - - gmx:100801492 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1050 4 8705697 8707058 Apr4g1050 4 8705697 8707058 ECH
Apr8g0246 8 1931985 1933145 Apr4g1050 4 8705697 8707058 PCT