Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0227 ATGGTAGGTCCGTCCAGCGCCGACGGTCGTAGGGGAGTTAGAATCGCCGTCGCCGGTGACGGAGGTACCGGAAAATCCACACTCATAGCCGCAATTGGATCGGATTCTTTCCCCGAGTCCGTTCCGGCTGTGCTTCCTCCAACTCGTTTACCCCATTATCTGTACCCCGATTCCGTTCCCCTTACGCTCATCGACACTCCTTCCAGCTTGGCAAAACAAGACACGCGCAATGAAGAATTGAAGCGAGCCGATGCGGTGGTTTTAACATATGCTTGTGATGAACCCGAGAGCTTTGAGCGTGTGAGTACTTACTGGCTCCCTGAACTGCGGAAGTTGGAGGTGCAGGCACCTGTGATTGTGGTGGGTTGCAAGCTTGATCTACAGAATGAAGACCGGCTTGTGAGCTTAGAGAGTCTCACGGCACATATCATGAGACGGTTCACTGAAATTGTCACCTGTGTTGAATGCTCTGCAGCTACTTTTTATCAGGTCCCTGAAGTTTTTTATTTTGCCCAAAAAGCAGTACTGCATCCAGTAGATCCGTTGTTTGATTATAAAAGACATGCTTTAACAGATCGATGTGTGAGGGCATTAAGAAGAATATTTGTTCTTTGTGATCATGACATGGATGATGCCCTCAATGATGAAGAACTAAATGACTTTCAGGTTAGATGCTTTAATGCACCGTTGCAGCCATCTGAAATAGAAAATGTCAAAACAATTGTAGAGCAGAAAGTTCCTGAAGGAGTCAACTCTGTTGGTCTTACCTTCCCAGGCTTTATTTATGTGAATAATATGTTTCTAAAGAAAGGGAGAACAGAGACATTCTGGGCTGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAGCTCCGGGATGATTTCCTTCCAGTGCCTCTTAAGCAGACTTCTGATCAGAGTGTGGAGCTGACAGGTGATGCTGTAGAGTTTTTGAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGATCCCTACGACCTGCTGAAGTTGATAAGCTATTTGAAACTGCTCCAGAAAGTCCATGGAACGATGCTCCGTATAAGGATGCAACAGAGAAAACCGATATGGGTTATATCTCTCTGAATGGATTTCTGTCTCAGTGGGCCCTTATGACATTGCTTGATCCACCACATAGCTTGGCCAATTTAATTTACATTGGATATAATGGCAATCCTGCTGCAGCACTCCGTGTCACTCATAGAAGATCATTAGATCGCAAGAAGCAAACAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAACATGCCGGGAAATCTACTTTGTTGTATTCATTATTGGGGAGGCCTTTCTCAAGTAATTATACTCCAACGACAGTTGACCAGTATGCGGCAAATGTAGTTGAATTAAAACGGGTGAGGGGAACTAGGAAAATTCTCATATTGCGTGAGATACCAGAGGATGGATTATTGGAATTTTTGTCAAATCAGGATTTTTTGGCTGCGTGTGATGTTGCTGTGTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGTTAGACAAGGAGAACTAGCTGGTTATAGAGTTCCTTGCCTGCTCATTGCTGCCAAGGATGATTTAACGCCATTCCCAAGGGCAGTACTAGATTCGGTTAAGGTTACTCAAGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGTGATTCTAGTAATGTGTACCATAAAATTGTTAATACTGCAGAACACCCTCATTTGAGCATTCCAGAAACTGAGAATTCAAGGAAAAGAAAGCAACACCACCAGCTTCTTCACCACTCCCTCATTTTTGCCTTAGTTGGGGCTGCTTTGGCGGTTGTTGGTTTAACGGCACGTCGTGCACGTACAGTGAAGAAGAATAGTGCTGCTTAG 1938 0.4329 MVGPSSADGRRGVRIAVAGDGGTGKSTLIAAIGSDSFPESVPAVLPPTRLPHYLYPDSVPLTLIDTPSSLAKQDTRNEELKRADAVVLTYACDEPESFERVSTYWLPELRKLEVQAPVIVVGCKLDLQNEDRLVSLESLTAHIMRRFTEIVTCVECSAATFYQVPEVFYFAQKAVLHPVDPLFDYKRHALTDRCVRALRRIFVLCDHDMDDALNDEELNDFQVRCFNAPLQPSEIENVKTIVEQKVPEGVNSVGLTFPGFIYVNNMFLKKGRTETFWAVLRKFGYDNDLKLRDDFLPVPLKQTSDQSVELTGDAVEFLNGIFRLLDTDKDRSLRPAEVDKLFETAPESPWNDAPYKDATEKTDMGYISLNGFLSQWALMTLLDPPHSLANLIYIGYNGNPAAALRVTHRRSLDRKKQTTERNVFQCYVFGSKHAGKSTLLYSLLGRPFSSNYTPTTVDQYAANVVELKRVRGTRKILILREIPEDGLLEFLSNQDFLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRQGELAGYRVPCLLIAAKDDLTPFPRAVLDSVKVTQELGIEAPIHVSMKLGDSSNVYHKIVNTAEHPHLSIPETENSRKRKQHHQLLHHSLIFALVGAALAVVGLTARRARTVKKNSAA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0227 645 ProSiteProfiles Miro domain profile. 421 592 IPR020860 GO:0003924|GO:0005525
Apr8g0227 645 Gene3D - 185 289 - -
Apr8g0227 645 Gene3D - 10 180 IPR027417 -
Apr8g0227 645 PANTHER RHO FAMILY GTPASE 1 493 IPR003578 GO:0005525|GO:0007264
Apr8g0227 645 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Apr8g0227 645 Pfam EF hand associated 229 312 IPR013567 -
Apr8g0227 645 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Apr8g0227 645 PANTHER MITOCHONDRIAL RHO GTPASE 1 493 - -
Apr8g0227 645 CDD Miro2 420 604 - -
Apr8g0227 645 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Apr8g0227 645 SUPERFAMILY EF-hand 181 377 IPR011992 -
Apr8g0227 645 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Apr8g0227 645 SMART rab_sub_5 13 178 - -
Apr8g0227 645 Gene3D - 489 590 IPR027417 -
Apr8g0227 645 PIRSF Miro 9 645 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Apr8g0227 645 Pfam EF hand associated 350 417 IPR013566 -
Apr8g0227 645 SMART ras_sub_4 10 178 - -
Apr8g0227 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 596 IPR027417 -
Apr8g0227 645 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Apr8g0227 645 Pfam Ras family 428 549 IPR001806 GO:0003924|GO:0005525
Apr8g0227 645 Gene3D - 291 483 - -
Apr8g0227 645 PRINTS Transforming protein P21 ras signature 13 34 - -
Apr8g0227 645 PRINTS Transforming protein P21 ras signature 114 127 - -
Apr8g0227 645 PRINTS Transforming protein P21 ras signature 153 175 - -
Apr8g0227 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 210 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0227 Apr-Chr8 1780243 1787128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0227 3 643 EF-hand Containing Proteins AT3G63150 56.942 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0227 K07870 - gmx:100806983 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1074 4 9008285 9016797 Apr8g0227 8 1780243 1787128 PCT