Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1074 ATGGCGAAACACTCGAGCTTGGCCGGTCGGAGTGGAGTTCGAGTCGTGGTCGCCGGTGACCGAGGCACCGGAAAGTCTAGCCTCATAGCTGCCATTGCATCGTCGGAGGCATTCCCCGAAGCCGTTCCACCCGTGCTTCCTCCCACTCTCTTGCCCCCTGATTTGTACCCTGACAACGTTCCTCTTACCATCATTGACACATCTTCTAGCTTGGAAAAACAAAGCAAGCGTAATGAACAATTGAAAGGAGCTGATGTGGTGATTTTAACATATGCTTGCAATGAGTCTGTGTCCTTTTCGCGGTTGAGCTCTTACTGGTTCCGGGAACTGCAGAAGTTGGAGGTGAAGGCACCTATAATTGTGGTTGGATGCAAGTTAGATCTGCGGGATGAAAGCCAGCAAGTGAGCTTAGAGCGTCTCATGACGCAGCTCCTACAACAGTTCAAGGAAATTGTCACCTGCATTGAGTGCTCTGCTGCTACGCAATACCAGGTTCCCGAAGTTTTTTATTTTGCACAAAAAGCAGTACTGCATCCAGTAGATCCATTGTATGATCAAGAAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGCGATCGTGACATGGATGATGCCCTCAATGATGCAGAACTAAATGAGTTTCAGGTTAGATGTTTCAATGCACCATTGCAATCAGCTGAACTGGAGAGCATCAAAACAGTTGTACAGGAGAAAGTACCTGAAGGAGTCAACTCGCTTGGTCTTACCTTTCCAGGATTTATCTATGTCCATAATATGTTTCTAAAGAAAGGCCGTCCGGAGACATTATGGGCTGTTTTAAGAAACTTTGGATATGATAATGATTTAAAACTCAAGGATAATTTCCTTCCCATACCATCTAAGCATGCTTCAGATCAGAGTGTGGAGCTAACAGGTGAAGCTGTAGAGTTTCTAAACGGTATCTTCCGATTGTTAGATACTGATAAAGATCGAGCCCTACGTTCTGCTGAAGTTGATAAATTATTTTGTACTGCTCCGGAAAGTCCATGGAATGACGCTCCATATATGGATGCTGCTGAGAGAACTGACATGAGTTACATATCTCTTAATGGGTTCCTGTCGCAGTGGGCCCTTATGACATTACTTGATCCTCCATGTAGTTTGGCAAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGAAGAGCAGTAGATCGCAAGAAACAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAGTCGGCTCTGTTGGATTCATTATTGGGAAGGCCTTTCTCAAATAATTATACTTCAACAACAGTTGAGAGGTTTGCAGCAAATTCCGTTGAATTAATAGGGGGAACAAGAAAAACTCTTATATTGCGGGAGATACCAGAGGGTGAAGTATCCAAAGTTTTGTCAAATCAGGATTTTTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGGCAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACTCCGTATCCAAGGGCTGTACAAGATTCAGTTAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCAAGTAATGTATACAATAAGATTGTTAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGAAAAAGGAAGCAGTACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAATTGGAGCTGCTATGGCAGTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTGAAGAAGAATTCTTCTGGTTAG 1935 0.4295 MAKHSSLAGRSGVRVVVAGDRGTGKSSLIAAIASSEAFPEAVPPVLPPTLLPPDLYPDNVPLTIIDTSSSLEKQSKRNEQLKGADVVILTYACNESVSFSRLSSYWFRELQKLEVKAPIIVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYDQESQALTDRCVRALRRIFVLCDRDMDDALNDAELNEFQVRCFNAPLQSAELESIKTVVQEKVPEGVNSLGLTFPGFIYVHNMFLKKGRPETLWAVLRNFGYDNDLKLKDNFLPIPSKHASDQSVELTGEAVEFLNGIFRLLDTDKDRALRSAEVDKLFCTAPESPWNDAPYMDAAERTDMSYISLNGFLSQWALMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGSKNAGKSALLDSLLGRPFSNNYTSTTVERFAANSVELIGGTRKTLILREIPEGEVSKVLSNQDFLAACDVAVFVYDSSDEYSWKKSRDLLEKVARQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVNAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASIGAAMAVVGLAACRAYAVKKNSSG* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1074 644 Gene3D - 488 589 IPR027417 -
Apr4g1074 644 SMART ras_sub_4 14 179 - -
Apr4g1074 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 596 IPR027417 -
Apr4g1074 644 SUPERFAMILY EF-hand 182 378 IPR011992 -
Apr4g1074 644 ProSiteProfiles Miro domain profile. 422 591 IPR020860 GO:0003924|GO:0005525
Apr4g1074 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 211 IPR027417 -
Apr4g1074 644 Gene3D - 292 482 - -
Apr4g1074 644 Gene3D - 186 290 - -
Apr4g1074 644 SMART rab_sub_5 13 179 - -
Apr4g1074 644 SMART rho_sub_3 15 179 IPR001806 GO:0003924|GO:0005525
Apr4g1074 644 PIRSF Miro 9 644 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Apr4g1074 644 PANTHER RHO FAMILY GTPASE 2 494 IPR003578 GO:0005525|GO:0007264
Apr4g1074 644 PRINTS Transforming protein P21 ras signature 13 34 - -
Apr4g1074 644 PRINTS Transforming protein P21 ras signature 115 128 - -
Apr4g1074 644 PRINTS Transforming protein P21 ras signature 154 176 - -
Apr4g1074 644 Gene3D - 3 179 IPR027417 -
Apr4g1074 644 ProSitePatterns EF-hand calcium-binding domain. 207 219 IPR018247 -
Apr4g1074 644 PANTHER MITOCHONDRIAL RHO GTPASE 2 494 - -
Apr4g1074 644 Pfam EF hand associated 230 313 IPR013567 -
Apr4g1074 644 CDD Miro2 421 600 - -
Apr4g1074 644 Pfam EF hand associated 351 418 IPR013566 -
Apr4g1074 644 ProSiteProfiles Miro domain profile. 10 178 IPR020860 GO:0003924|GO:0005525
Apr4g1074 644 ProSiteProfiles small GTPase Rab1 family profile. 1 206 - -
Apr4g1074 644 Pfam Ras family 429 554 IPR001806 GO:0003924|GO:0005525
Apr4g1074 644 Pfam Ras family 14 176 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1074 Apr-Chr4 9008285 9016797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1074 1 642 EF-hand Containing Proteins AT3G63150 58.723 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1074 K07870 - gmx:100803790 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1074 4 9008285 9016797 Apr8g0227 8 1780243 1787128 PCT