Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0103 ATGAAGAGGCTAGATTATGCACAATGGACTGTAGTAGATCCCCTACCTTCCTATGGTCAAGGAATTGACGTTCCAGGAAGGAGATATTGCAGCTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGCCAGGGTACTGTTTGGTGGGACCTGATCAATACTCATTCCTTAAATTACAGCAGGCCACATATAATAGAACTTATTAGTTCTGATAATATCATCATCTCAAATTTGACGTTTTTAAACTCTCCTGCTTGGGGCATCCATCCTGTATATTGCAGCAAAGTTCATATTCAAAACATAACAGTTCATGCACCAGCTGAATCCCCCTACACAAGCGGTGTAGTTCCAGATTCTTCTGAGTATGTTTGCATTGAGAACAGCAATATTAGCTCTGGTCACGATGCAATTGTGCTGAAGAGTGGTTGGGATCAGTATGGAGTTTCCTTTGGCAAACCAACCTCAACTGTCCACATCAGGGGCGTTCAACTACAATCATCATCGGGCGCTGGCCTAGCATTTGGAAGTGAGATGTCTGGAGGAATATCTGATATAATTGCAGAGAAGCTACATATTATCAACTCAACCATTGGAATTCAGCTAAAGACGACTAAGGGTAGAGGTGGCTATATGAAAGGCATTGTCATTTCTGACGCAAAACTGGAAAATACTTTCTTGGGTATTAGCATGACGGGATACTATGGTTCTCATCCAGATGATCAGTATGATCCTAGTGCAGTTCCGGCTGTTGGAAATATTACTTTTCAGAATGTGATTGGTGCAAATATTACTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCATTTACTCCTATCTGTCTTTCGAATGTGACTTTTTCTGCCAGTTCTGAGTCATCTCCCTCATGGTTTTGTTCTAATGTAATGGGAATCTCGGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACATATACTCAAACTTTTCCTCTTGCTTTTCTTTCCCACATCCATCATCTAGTTATGTCTCAAGCGCATGA 1053 0.4103 MKRLDYAQWTVVDPLPSYGQGIDVPGRRYCSLIYGQNLSDVVITGDNGIIDGQGTVWWDLINTHSLNYSRPHIIELISSDNIIISNLTFLNSPAWGIHPVYCSKVHIQNITVHAPAESPYTSGVVPDSSEYVCIENSNISSGHDAIVLKSGWDQYGVSFGKPTSTVHIRGVQLQSSSGAGLAFGSEMSGGISDIIAEKLHIINSTIGIQLKTTKGRGGYMKGIVISDAKLENTFLGISMTGYYGSHPDDQYDPSAVPAVGNITFQNVIGANITIAGNFSGIVDSPFTPICLSNVTFSASSESSPSWFCSNVMGISEEVFPEPCPDLQNIYSNFSSCFSFPHPSSSYVSSA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0103 350 SMART pbh1 191 212 IPR006626 -
Apr8g0103 350 SMART pbh1 129 150 IPR006626 -
Apr8g0103 350 SMART pbh1 220 241 IPR006626 -
Apr8g0103 350 SMART pbh1 79 101 IPR006626 -
Apr8g0103 350 SMART pbh1 163 185 IPR006626 -
Apr8g0103 350 SMART pbh1 102 128 IPR006626 -
Apr8g0103 350 Gene3D - 4 317 IPR012334 -
Apr8g0103 350 SUPERFAMILY Pectin lyase-like 29 327 IPR011050 -
Apr8g0103 350 PANTHER POLYGALACTURONASE-RELATED 5 342 - -
Apr8g0103 350 PANTHER PECTIN LYASE-RELATED 5 342 - -
Apr8g0103 350 Pfam Glycosyl hydrolases family 28 32 312 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0103 Apr-Chr8 852531 856620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0103 5 338 Glycoside Hydrolase AT3G16850 55.389 2.41e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0103 - - aprc:113872494 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0103 8 852531 856620 Apr8g0103 8 852531 856620 ECH
Apr4g0513 4 4271462 4277888 Apr8g0103 8 852531 856620 PCT