Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0513 ATGTATGCATTGTGCAAAGAACCCTCGGATTCTATTTCTTTCTCTGCTGAAGCTGAAGGATGGGACCCTGACATTGCTGCAAAGTCTTCACCAAAAGAAGTGGCGGTGCTTTTACTTGTAGCATTAAGCGCTGCTCTGGAAAGCAATGGAGAAGAAAACGGTGGCCCATGTAAACAGAAAGCATTGGATGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGAGCTGTTGGAGATGGGATAACGCTGAACACAGTTGCGTTTCAAAATGCAATATTTTATCTCAAGTCATTTGCGGACAAAGGTGGTGCTCAGCTATATGTTCCATCTGGTAGATGGCTTACTGCAAGTTTTAACCTCACCAGCCACCTCACTCTGTTCCTTGAGAGAGGCGCAACCATCATTGCATCCCAGGATTATGCTCATTGGGACTTAGTGGATTCCCTCCCTTCTTATGGTAGAGGAATTGATGTTCCAGGTGGGAGATATCGCAGTTTGATCTATGGACAGAATTTAAGTGATGTGGTGATTACAGGTGATAATGGAACTATAGATGGGCAAGGCTCTATCTGGTGGGAGCTCTTCAGTTCTCATTCCTTAAATTACAGTCGACCAAATCTTGTAGAATTTGTTGATTCTGTTGATGTCATAATTTCCAATTTGACATTTTTAAACTCTCCTGCTTGGGACATCCATCCGGTATATTGCAGTAACATTAAAATTCAGAACATAACTATTCGTACACCAGCTGAATCCCCTTATACAAGCGGTATAGTTCCAGATTCTTCACAGCATGTTTGCATTGACAACAGCAACATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAGTACGGTATTGCCTATGGAAAACCAACCTCGAGTGTCCATATCAGTAATGTTCACCTACAATCATCATCAGGTGCTGGCTTGGCATTTGGGAGTGAGATGTCTGGTGGAATATCTGATATTATTGCTGAGAAGTTTCATGTACTTAACTCACCTATTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTATATGAAAGACATCTTCATTTCTGATGCAGAATTGGACAATATTTACTTGGGTATCAGCATGACAGGATCCTCCGGTCTCCATCCAGATGACAAGTATGACACAAGTGCACTTCCATTTGTTGGTAGCATTACTTTTAAGAATGTGATTGGTGCAAATATTAATGTTGCCGGGAATTTTTCAGGAATAGATGAATCACCATTCACAACAATCTGTCTTTCAAACGTGACTTTTTCTGTCAGTTCTGAGCCACCCCCTTCATGGTTTTGTTCTAATGTATTGGGTTTCTCTGAGGAGGTTTTTCCTGAGCCTTGTCCTGATCTCCAAAGCTCGTATTCCAAGCTTTCTTTTTCTTGCTTTTCCTCCTTATATATACACTTCAGTAATGTCTCAGGCTTTTTATATCATCATCCCCAAGAATTATAG 1482 0.4177 MYALCKEPSDSISFSAEAEGWDPDIAAKSSPKEVAVLLLVALSAALESNGEENGGPCKQKALDARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGRWLTASFNLTSHLTLFLERGATIIASQDYAHWDLVDSLPSYGRGIDVPGGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWELFSSHSLNYSRPNLVEFVDSVDVIISNLTFLNSPAWDIHPVYCSNIKIQNITIRTPAESPYTSGIVPDSSQHVCIDNSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHISNVHLQSSSGAGLAFGSEMSGGISDIIAEKFHVLNSPIGIELKTTRGRGGYMKDIFISDAELDNIYLGISMTGSSGLHPDDKYDTSALPFVGSITFKNVIGANINVAGNFSGIDESPFTTICLSNVTFSVSSEPPPSWFCSNVLGFSEEVFPEPCPDLQSSYSKLSFSCFSSLYIHFSNVSGFLYHHPQEL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0513 493 SUPERFAMILY Pectin lyase-like 61 461 IPR011050 -
Apr4g0513 493 PANTHER POLYGALACTURONASE-RELATED 34 477 - -
Apr4g0513 493 PANTHER PECTIN LYASE-RELATED 34 477 - -
Apr4g0513 493 Pfam Glycosyl hydrolases family 28 165 445 IPR000743 GO:0004650|GO:0005975
Apr4g0513 493 Gene3D - 56 445 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0513 Apr-Chr4 4271462 4277888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0513 34 488 Glycoside Hydrolase AT3G16850 59.868 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0513 - - gmx:100787190 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0513 4 4271462 4277888 Apr8g0103 8 852531 856620 PCT