Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0062 ATGAGTTATGCCCGTCTGATTTCCGGCGGAGGATGGCTTTTCCGGCGGCTTTGCACGGTGGCTGAGCGTCCGGAAAAAGAGTTGAGCCTTTATCGGAGGTTATCGGCGCTGTATATGACCGGAGGAAGCGTGAGGGAAACGTTGAACCAGTACATAATGGAGGCCAAAGCTATCAGAAAATCAGAGCTCGACAGTTGCGTCAAGCAGCTCCGAAAGTATCACAAATTCCAGCACGCACTCGAGATAATGGAATGGATGGAGATGAGGAAAGTTAACTTTTCCTATAGTGATTATGCAGTGCATTTAGATCTTTTGTCCAAAACCAAAGGGTTGGCTGCAGCTGAGAATTATTTAAGTGGTCTTCCTCCTCGTGCCAAAAACAACTACACCTATGGTTCTCTTTTGCACTGCTATTGCATGAAAGGAATGACAGACAAGGCATTGGATCATTTTCTCAAGATGGATGAATTAGGTTATGTCAATGGTGTAACTTTCGGTAATCTGATGAGTATGTATATGAGACTGGGTCAACCCCAGAAAGTGCCTCAGCTAGTGCGTGATTTGAAACAGAGGGACATTCCCATGGTTGCATTCGTATACCATATCTGGATGAATAGCTGTGCCTCTTTGAATGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGCAAAGAGAAGATGGAGAGAAAATTGATTGGCTGACTTATAGCAACCTTGCTGCTATCTATGTAAAGGTTAAAGACTTTGAGAAAACTGAGATGATGCTCAAGATGCTGGAGAAAGAGGTGAAACCACTGCAACGCGAAGCTTACCATTGCTTGCTAACCCTTTATGCAGGGACTGGTAATCCTGGAGAGGTTCACAGAATATGGAATTCTCTCAAATCTGTCTCCCCTGTGACCAATATCAGCTATCTTACTATGCTCCATACCCTCCGAAGGCTTAATGATGTGGAGGGCATAACAAAATGCTTTAGGGAGTGGGAGTCTGGTTGTGTTAGTTATGATCTAAGGTTGGTTTCTGTTTGTATTTCTGCTTACTTGAATCATAACATGGTTGGGGAAGCTGCATCGGTCTTTGAGGAGGCTATCAGGAGGAGGAGGAAAGGACCTTTACATCAGATCTTTAAGATTCGGGAATTATTTATGATGTATTTCTTGGAGAAACGTCAGCTGGATAGTGCTGTGAGCCATTTAGAGGCAGCATTTTCGGAAGTCGAAGGTGATGATTGGCATCCTTCACCACAAGTTGTTAGTGCTTTTGTCAAGTATTATGAAGTAGAGAAGAATGTTGAGTGTGTTGAGGAGTTGCGCAAGATTCTCAAGGCTAGCAATTTTGATGATTCCCGGATTCAAGCTTGCATTACTGCATTCAAATCATCTCCTGAAATTCATCCAAGATTGAAGGAAGATTCTCAAGTTTACCATGCGCCGGATATCTGGACATCATGGAAAAACAAGTTTTTATAG 1470 0.4327 MSYARLISGGGWLFRRLCTVAERPEKELSLYRRLSALYMTGGSVRETLNQYIMEAKAIRKSELDSCVKQLRKYHKFQHALEIMEWMEMRKVNFSYSDYAVHLDLLSKTKGLAAAENYLSGLPPRAKNNYTYGSLLHCYCMKGMTDKALDHFLKMDELGYVNGVTFGNLMSMYMRLGQPQKVPQLVRDLKQRDIPMVAFVYHIWMNSCASLNDLDGVERVYEEMQREDGEKIDWLTYSNLAAIYVKVKDFEKTEMMLKMLEKEVKPLQREAYHCLLTLYAGTGNPGEVHRIWNSLKSVSPVTNISYLTMLHTLRRLNDVEGITKCFREWESGCVSYDLRLVSVCISAYLNHNMVGEAASVFEEAIRRRRKGPLHQIFKIRELFMMYFLEKRQLDSAVSHLEAAFSEVEGDDWHPSPQVVSAFVKYYEVEKNVECVEELRKILKASNFDDSRIQACITAFKSSPEIHPRLKEDSQVYHAPDIWTSWKNKFL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0062 489 Gene3D Tetratricopeptide repeat domain 247 393 IPR011990 GO:0005515
Apr8g0062 489 Coils Coil 249 269 - -
Apr8g0062 489 Gene3D Tetratricopeptide repeat domain 59 229 IPR011990 GO:0005515
Apr8g0062 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Apr8g0062 489 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Apr8g0062 489 TIGRFAM PPR: pentatricopeptide repeat domain 129 159 IPR002885 -
Apr8g0062 489 PANTHER OS12G0527900 PROTEIN 4 472 - -
Apr8g0062 489 SUPERFAMILY TPR-like 128 327 IPR011990 GO:0005515
Apr8g0062 489 Pfam PPR repeat 163 192 IPR002885 -
Apr8g0062 489 Pfam PPR repeat 129 158 IPR002885 -
Apr8g0062 489 Pfam PPR repeat 341 366 IPR002885 -
Apr8g0062 489 Pfam PPR repeat 199 226 IPR002885 -
Apr8g0062 489 PANTHER OS01G0301500 PROTEIN 4 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0062 Apr-Chr8 543777 546138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0062 29 455 EF-hand Containing Proteins AT1G02150 31.944 3.61e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0062 - - gmx:100781679 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0062 8 543777 546138 Apr8g0062 8 543777 546138 ECH
Apr8g0062 8 543777 546138 Apr4g0351 4 2982083 2983093 PCT