Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0054 ATGGTTGCCCCTTGTCCAACTTCCATGATGATAGGAACAAAGAAAACAAAGGGTATGGGAATTCCAACAATCGACCTGTCAATGGAAAGGTCAAAGTTATCGGAACTAGTGGTGAAAGCCTGCGAGGAATATGGTTTCTTCAAGGTGGTGAACCACAGTGTGGCAAAAGAGGTCATTTCAAGGTTGGAAGAAGAGGGAACAGAGTTTTTCTCCAAAACCTCTTCAGAGAAACGCCGAGCTGGCCCTGCCAACCCTTTTGGCTATGGTTGCAAAAACATTGGTCCCAATGGAGATATGGGTGACCTTGAATATCTCCTCCTTCATACCAATCCTCTTTCCATCTCTGAGAGATCCAAAACCATAGCAAACGACGACCCTACTAAGTTCAGGAGCGCTGTGAATGATTATATAGAAGCAACTAAAGAACTAGCATGTGAGATTCTTGATCTAGTAGAGGAGGGTTTGTGGGTCCAAGACAAATTCTCACTGAGCAAGCTCATCAAAGACGTCCATAGTGACTCACTCCTGAGGATCAATCACTACCCTCCCGTGAGCCTAAAGGGCCACAACAAGAATTGGGACCCGTCCAAACTAGAGCCACATCAACTCCAGAGCGATAAAAGTAATAATAACATTGGCTTTGGGGAGCATTCTGACCCTCAGATCTTGACCATCTTGCGGTCCAACAACGTGGGGGGCCTTCAAATTTCCACTCACGACGGGTTGTGGATCCCTGTCCCCCCTGACCCCAATCAATTCTTCGTCATGGTTGGCGATGCCCTCCAGGTTATGACAAATGGAAGGTTTGTGAGCGTGAGACACCGAGCATTGACCAACACAACCAAGGCCAGAATGTCAATGATGTACTTTGCAGCACCACCGCTGAATTGGTGGATCACTCCAATGCCAAAGATGGTGACACCCCACAATCCAAGTCTTTATAAGCCCTTCACGTGGGCCCAATACAAGCAAGCAGCATACTCTCTAAGATTGGGAGACTCTCGTCTTGATCTCTTCAAGATCCAACGACAACAAGATAGTCATCTCGCACCTACTTCTCCCTGA 1065 0.4714 MVAPCPTSMMIGTKKTKGMGIPTIDLSMERSKLSELVVKACEEYGFFKVVNHSVAKEVISRLEEEGTEFFSKTSSEKRRAGPANPFGYGCKNIGPNGDMGDLEYLLLHTNPLSISERSKTIANDDPTKFRSAVNDYIEATKELACEILDLVEEGLWVQDKFSLSKLIKDVHSDSLLRINHYPPVSLKGHNKNWDPSKLEPHQLQSDKSNNNIGFGEHSDPQILTILRSNNVGGLQISTHDGLWIPVPPDPNQFFVMVGDALQVMTNGRFVSVRHRALTNTTKARMSMMYFAAPPLNWWITPMPKMVTPHNPSLYKPFTWAQYKQAAYSLRLGDSRLDLFKIQRQQDSHLAPTSP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0054 354 PRINTS Isopenicillin N synthase signature 37 54 - -
Apr8g0054 354 PRINTS Isopenicillin N synthase signature 217 238 - -
Apr8g0054 354 PRINTS Isopenicillin N synthase signature 253 279 - -
Apr8g0054 354 Pfam 2OG-Fe(II) oxygenase superfamily 173 292 IPR044861 -
Apr8g0054 354 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 4 342 - -
Apr8g0054 354 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 342 - -
Apr8g0054 354 Gene3D - 3 330 IPR027443 -
Apr8g0054 354 SUPERFAMILY Clavaminate synthase-like 9 333 - -
Apr8g0054 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 171 301 IPR005123 -
Apr8g0054 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 90 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0054 Apr-Chr8 454373 457920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0054 14 341 Glycosyltransferase AT5G59530 28.448 1.04e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0054 K04125 - gmx:100779525 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0054 8 454373 457920 Apr8g0054 8 454373 457920 ECH
Apr4g0563 4 4665683 4670165 Apr8g0054 8 454373 457920 PCT