Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0563 ATGGTTGTGCCTTCTCCAACTTCCATGATGAGAAGTTGCAAGAAAACAAAGGCAATGGGAATTCCAACGATTGACCTATCCATGGAAAGGTCAGAGTTGTCAGCACTAGTGGTAAGAGCCTGTGAAGAATATGGTTTCTTCAAAGTGGTCAACCACAGTGTGCCAAAAGAGGTCATTTCAAGATTGGAAGAAGAGGGAACTGAGTTTTTTGCCAAACCCACCCAAGAAAAACGCCAAGCTGGCCCAGCCACTCCTTTTGGTTATGGCTTCAGCAATATTGGCCCCAATGGTGATATGGGTGACCTTGAGTATCTCTTACTTCATGCTAATCCGCTTTCCATATCTGAGAGATCCAAAACCATCGCTAATGACTCTTCCAAGTTCAGTTGTGTAGTGAATGATTATATTGAAGCAGTAAAAGAAGTAGCGTGTGAGATTGTGGATATGGTGGTTGAGGGGTTAGGGGTCCCAGACAAGTTCTCACTTAGCAGGATGATAAGGGATGTGCATAGTGATTCAGTTCTTAGGATAAATCACTACCCTCCATTGAAGCTCAGGTTGCAGGGCAACAAGAATAGCATTGGCTTTGGGGCGCATTCTGACCCTCAGATATTGACCATCATGTGGTCCAACAACGTTGGAGGCCTTCAAATTTCCACCACCGACGGCTTGTGGATACCTGTCCCCCCTGACCCCAATCAATTCTTCGTCATGGTTGGTGATGTCCTCCAGGTTTTGACGAATGGAAGGTTTATAAGCGTGAGGCACAGAGCATTAACGAACACAATGAAGGCAAGGATGTCGGTGATGTACTTTGCAGCACCACCACTTAATTGGTGGATAACACCGCTGCCGAAGATGGTGTCGCCACCACAAAATCCAAGTCTGTATAGGCCCTTCACATGGGCCCAGTACAAGCAAGCAGCATACTCTCTACGGCTCGGAGATTCTCGTCTTGACCTCTTCAAGGCCCAACAAGATACCCATCTTGTAGCTGCCTCTGCTTCACATATTCAATGTTGA 1023 0.4643 MVVPSPTSMMRSCKKTKAMGIPTIDLSMERSELSALVVRACEEYGFFKVVNHSVPKEVISRLEEEGTEFFAKPTQEKRQAGPATPFGYGFSNIGPNGDMGDLEYLLLHANPLSISERSKTIANDSSKFSCVVNDYIEAVKEVACEIVDMVVEGLGVPDKFSLSRMIRDVHSDSVLRINHYPPLKLRLQGNKNSIGFGAHSDPQILTIMWSNNVGGLQISTTDGLWIPVPPDPNQFFVMVGDVLQVLTNGRFISVRHRALTNTMKARMSVMYFAAPPLNWWITPLPKMVSPPQNPSLYRPFTWAQYKQAAYSLRLGDSRLDLFKAQQDTHLVAASASHIQC* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0563 340 Pfam 2OG-Fe(II) oxygenase superfamily 172 274 IPR044861 -
Apr4g0563 340 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 4 325 - -
Apr4g0563 340 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 94 IPR026992 -
Apr4g0563 340 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 325 - -
Apr4g0563 340 Gene3D - 3 313 IPR027443 -
Apr4g0563 340 SUPERFAMILY Clavaminate synthase-like 8 316 - -
Apr4g0563 340 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 283 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0563 Apr-Chr4 4665683 4670165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0563 19 323 Glycosyltransferase AT5G59530 28.391 3.46e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0563 K04125 - gmx:100777233 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0563 4 4665683 4670165 Apr8g0054 8 454373 457920 PCT