Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0026 ATGAAGAGACTTTCAACTTTGGTGAATGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCCCATGGACAGTGTGGAGCAGCTCATGCCACAAACATATAAACTTGAAGGAAGTTCGACCTCACAGTGTCAGCATTACCGAATTTGGAGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATCTTTTACCTAAATTCATTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCTGCTGGCCGGTGGTTAACTGGAAGTTTTGATCTCATCAGCCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACAAACTCTGACGATTGGCCAGTTGTGGATCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCAGGTGGAAGGCATAGAAGCCTCATTTATGGGCGCAATTTGACTGATGTTGTCATAATAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACATTGGATTATACACGTCCTCATTTGGTTGAGTTGATGAATTCAACTGGGGTTCTCATTTCAAATGTAACTTTCTTGAATTCTCCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTACAATTCAGAATGTCACAATCCTTGCTCCTCTTAGTTCACCAAATACAGATGGGATTGATCCAGATTCTTCAGACAATGTATGTATTGAAGACTGTTACATAAGCACGGGTGATGATCTGATTGCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTAGACCCAGTACAAATATTAACATCCACAGGCTCATTGGGAAAACAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTGCATGCAGAAGATATTAAAATTTTTTATTCACATAGCGCAATCAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGATCTTGGATAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGACACCTATGACCCAGATGCACTACCAGTAATAGAAAGGATTACTATCAAGGATGTGACAGGGGAAAAAGTCAAACGGGCTGGACTTATGCAGGGTATTAGAGGTGACAACTTTGTCAATATCTGCTTATCAAACATCACCCTTAATGTGAGCTCAAAATTTCCATGGAACTGCTCTTATGTTAAAGGATACTCCGATTTGGTTTCACCAGAAGTTTGTGAGCCTCTCAAAGAGAGAATATTCCCTGAGCATACTTCGGACTGTTACTATTTACCGAACCACTTAAAGAGTTGGAGTAGTCAAAACACGGGTTCATGGTTACTGTCATAG 1395 0.4086 MKRLSTLVNVFLVLALFSCSPWTVWSSSCHKHINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVVIIGNNGTIDGQGSIWWDKFRNKTLDYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTILAPLSSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDGYGISFGRPSTNINIHRLIGKTTSAGIAIGSEMSGGVSEVHAEDIKIFYSHSAIRIKTSPGRGGYVRNVYISNMILDNVDIAIRFTGLYGEHPDDTYDPDALPVIERITIKDVTGEKVKRAGLMQGIRGDNFVNICLSNITLNVSSKFPWNCSYVKGYSDLVSPEVCEPLKERIFPEHTSDCYYLPNHLKSWSSQNTGSWLLS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0026 464 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Apr8g0026 464 Gene3D - 23 418 IPR012334 -
Apr8g0026 464 SMART pbh1 271 292 IPR006626 -
Apr8g0026 464 SMART pbh1 210 236 IPR006626 -
Apr8g0026 464 SMART pbh1 298 319 IPR006626 -
Apr8g0026 464 SMART pbh1 327 348 IPR006626 -
Apr8g0026 464 SMART pbh1 237 269 IPR006626 -
Apr8g0026 464 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Apr8g0026 464 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Apr8g0026 464 PANTHER OS07G0245200 PROTEIN 8 448 - -
Apr8g0026 464 PANTHER PECTIN LYASE-RELATED 8 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0026 Apr-Chr8 250287 254423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0026 1 464 Glycoside Hydrolase AT3G62110 69.068 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0026 - - gmx:100786985 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0599 4 4949665 4952884 Apr8g0026 8 250287 254423 PCT