Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0599 ATGAGGAGACATTCAACACTCGTGGAAGTGCTTCTGGTACTTGCATTGTTCAATTGTTGTTCATGGACAGTGTGGAGCAGCACACTTTGCAAGCAGACAAACTTTGAGGAAGTTCGACCTCACAGTGTCAGCATCACCGAATTTGGTGCAGTTGGCGATGGGATCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTCAATTCCTTTGCAGACAAAGGCGGAGCAAAGCTTTTTGTCCCGGCTGGCCGGTGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGCTGGACAAAGATGCAGTAATTCTTGGATCAACGAACTCTGAGGATTGGCCAGTTGTTGATCCTCTACCATCTTATGGGAGAGGAAGAGAGTTGCCAGGTGGAAGGCATAGGAGCCTTATTTATGGGCACAATTTGACTGATGTTATCATAACTGGTAATAATGGGACCATCGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTTGGAACAAAACTCTGGATTATACACGTCCTCATTTGGTGGAATTGATGAATTCAACCGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTGTACTGCAGCCAAGTAACAGTTCAGAATGTCCGGATCCTTGCTCCTCTTAATTCACCAAACACAGATGGGATTGATCCAGACTCTTCTGATAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAGTATGGCATCGCATATGGACGGCCCAGCACAAACATTATCATCCACAGGCTTGTTGGGAGAACTGAAACGAGTGCAGGGATTGCTATTGGAAGCGAAATGTCCGGTGGTGTATCCGAAGTTTATGCAGAAGATATTCAATTCTATGAATCATATAATGCAATCAGAATAAAGACTTCTCCTGGCAGGGGTGGTTATGTTAGAAACATCTATGTCTCTAACATGACCTTGACTAATGTTGATATTGCTATTAGGTTCACTGGTTTATATGGAGATCATCCTGATGATGGTTATGACCCAAATGCTCTACCTGTAATAGAAAAGATTACAATCAAGGATGTGATAGGAGAAAAGATAAAAAAAGCTGGTCTTATGGAGGGTATAGAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCACCCTTAATGTGAGCTCACACTATCCATGGAACTGCTCAAACGTTGAAGGATACTCTGACTTGGTTTTGCCAGAAGCTTGTGAACCTCTCAAGGATAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTGTCAAATCCCCTACCAAATTCGAATGATCAACATAGAGGTGCTTGGTTTATGTCTTGGTAA 1401 0.4204 MRRHSTLVEVLLVLALFNCCSWTVWSSTLCKQTNFEEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGHNLTDVIITGNNGTIDGQGSIWWSRFWNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPLNSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGRTETSAGIAIGSEMSGGVSEVYAEDIQFYESYNAIRIKTSPGRGGYVRNIYVSNMTLTNVDIAIRFTGLYGDHPDDGYDPNALPVIEKITIKDVIGEKIKKAGLMEGIEGDNFVNICLSNITLNVSSHYPWNCSNVEGYSDLVLPEACEPLKDRIFPEHCSDCYYLSNPLPNSNDQHRGAWFMSW* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0599 466 PANTHER OS07G0245200 PROTEIN 7 448 - -
Apr4g0599 466 PANTHER PECTIN LYASE-RELATED 7 448 - -
Apr4g0599 466 Pfam Glycosyl hydrolases family 28 138 418 IPR000743 GO:0004650|GO:0005975
Apr4g0599 466 SMART pbh1 271 293 IPR006626 -
Apr4g0599 466 SMART pbh1 237 269 IPR006626 -
Apr4g0599 466 SMART pbh1 328 349 IPR006626 -
Apr4g0599 466 SMART pbh1 210 236 IPR006626 -
Apr4g0599 466 SMART pbh1 299 320 IPR006626 -
Apr4g0599 466 SUPERFAMILY Pectin lyase-like 36 431 IPR011050 -
Apr4g0599 466 Gene3D - 23 422 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0599 Apr-Chr4 4949665 4952884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0599 1 466 Glycoside Hydrolase AT3G62110 68.922 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0599 - - gmx:100817309 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0599 4 4949665 4952884 Apr8g0026 8 250287 254423 PCT