Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0023 ATGGCATTCTCTTTCCCTTCTATTGGTGTCTTTCTCTCTAGCTTCTTATTTTGTTGTACTATTCTGCTTTCTTCCACATCTTTGGGAGCTAAAGCTCGTAGCTCATCCATCATACCCGTCTCATCTCTGATTAGCAAACAGCTTTTTGATTCCATTTTCCTACACAAAGATGACACTGCATGCCCTGCCAAAAACTTCTACACCTATGACTCATTCATAATCGCATCAAAATGCTTCCCTGGATTTGGTAGCAGCGGAAGTGTAACGACGCGGAAGCGTGAGATTGCCGCATTTCTTGCTCAGATTTCACATGAAACCACAGGTGGGTGGGCTACTGCACCTGATGGACCTTATGCTTGGGGATTGTGCTTCAAGGAAGAAGTTAGTCCTCAAAGTGACTATTGTGATTCCACCAACAAACAATATCCCTGTTATCCAGGAAAAACCTACCAAGGCAGAGGACCAATTCAACTTTCTTGGAACTACAACTATGGGCCAGCAGGGAAGGCCTTAGGATTTGATGGATTGAGAAACCCAGAGATTGTGTCAAACAATTCAGTGATTGCCTTTAAAACATCTCTCTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGCCACAGTGTTATGATTGGAAAATATGTGCCAACAAAAGCTGACGTGGCAGCTAATCGAACAGCGGGGTATGGTCTTGTCACTAACATTATCAATGGTGGACTCGAATGTGGCATTCCTAATGATGCAAGGGTTAATGATCGGATTGGGTACTTTCAAAGATATGCAACTCTGTTTAACGTAGATACAGGATCTAATTTGGATTGTGCTCATCAAAAATCCTTTTAA 846 0.4243 MAFSFPSIGVFLSSFLFCCTILLSSTSLGAKARSSSIIPVSSLISKQLFDSIFLHKDDTACPAKNFYTYDSFIIASKCFPGFGSSGSVTTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSDYCDSTNKQYPCYPGKTYQGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVSNNSVIAFKTSLWFWMTEQKPKPSCHSVMIGKYVPTKADVAANRTAGYGLVTNIINGGLECGIPNDARVNDRIGYFQRYATLFNVDTGSNLDCAHQKSF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0023 281 PIRSF Endochitinase 9 281 IPR016283 GO:0004568|GO:0005975
Apr8g0023 281 Gene3D - 47 281 - -
Apr8g0023 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr8g0023 281 PANTHER CHITINASE 10 15 281 - -
Apr8g0023 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr8g0023 281 CDD chitinase_GH19 44 275 - -
Apr8g0023 281 Gene3D Endochitinase, domain 2 126 184 - -
Apr8g0023 281 PANTHER CHITINASE-RELATED 15 281 - -
Apr8g0023 281 SUPERFAMILY Lysozyme-like 40 281 IPR023346 -
Apr8g0023 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0023 Apr-Chr8 234110 235478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0023 15 281 Glycoside Hydrolase AT4G01700 69.288 2.34e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0023 - - gmx:100785397 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0601 4 4976949 4977954 Apr8g0023 8 234110 235478 PCT