Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0601 ATGACATTCTTCTTCTTCTTGAGCTTATGTTGCTTCATTGGTCTTCTATATTCATCAACTTTGGAAGCTGAAGCATGGGGCTCCCCCTACGTGCCCATCTCTTCTCTCATAAGCAAAAAAAATTTTAACACCCTTTTTCTACACAAAGATGACACTGCATGCCCTGCCAAAGACTTCTACACCTACGACTCGTTCATTCATGCATCCAAATTCTATCCCACATTTGGTACTACTGGTTGTTTAACCACACGCAAGCGTGAGATTGCTGCATTTCTTGCTCAAATTTCCCATGAAACCACCGGTGGATGGGCCACTGCACCTGACGGTCCATATGCTTGGGGCTTGTGCTTCAAGGAAGAAATAAACCCTAAGATTAATTACTGTGATTCTACTAACAAACAATGGCCTTGCTACCCAGGCAAAAGTTACAAGGGAAGAGGACCCATTCAACTTTCTTGGAACTATAACTATGGGCCAGCAGGGAAGGCTTTGGGGTTTGATGGACTGAGGAGCCCAGAGATTGTGTCGAACGATTCAGTGATTGCCTTCAAAACTGCGCTGTGGTTTTGGACGACAGAGAGAAAGGCAGAACCTTCTTGCCACGATGTGATGGTGGGAAAATATGTGCCAACAGAAGCTGACATAGCAGCTAATCGAACAGCTGGTTATGGCTTGGTGACTAACATAATCAATGGTGGGCTAGAATGTGGAATTCCTGGTGATGCAAGAGTAAATGATAGAATTGGATTTTTTGAAAGATATGCTAAGTTGTTCAACGTCGACACTGGACCTAACTTAGATTGTGGATATCAGAAACCCTTCTAA 825 0.4364 MTFFFFLSLCCFIGLLYSSTLEAEAWGSPYVPISSLISKKNFNTLFLHKDDTACPAKDFYTYDSFIHASKFYPTFGTTGCLTTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPKINYCDSTNKQWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRSPEIVSNDSVIAFKTALWFWTTERKAEPSCHDVMVGKYVPTEADIAANRTAGYGLVTNIINGGLECGIPGDARVNDRIGFFERYAKLFNVDTGPNLDCGYQKPF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0601 274 CDD chitinase_GH19 37 268 - -
Apr4g0601 274 SUPERFAMILY Lysozyme-like 33 274 IPR023346 -
Apr4g0601 274 PANTHER OS05G0138200 PROTEIN 22 274 - -
Apr4g0601 274 Gene3D - 40 274 - -
Apr4g0601 274 PIRSF Endochitinase 8 274 IPR016283 GO:0004568|GO:0005975
Apr4g0601 274 Gene3D Endochitinase, domain 2 119 177 - -
Apr4g0601 274 PANTHER CHITINASE-RELATED 22 274 - -
Apr4g0601 274 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr4g0601 274 Pfam Chitinase class I 36 268 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0601 Apr-Chr4 4976949 4977954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0601 6 274 Glycoside Hydrolase AT1G02360 66.667 4.40e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0601 - - gmx:100784196 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0601 4 4976949 4977954 Apr8g0023 8 234110 235478 PCT