Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0982 ATGGCATCCGAGAGAATTCTCAATCCGCTTAAGTGTTGGTTCTCAAAGATAAATCTCAAGCTTAGTCTTAATGGCCGAAGATCATCAAGATCATCACTCACACCATGCTCTCCAATATCATCATGTTCTACCGTGAAAAGAAATAGTAAAGAGGACGAGTTCAAGGAGGTTTTTCGTCGCTTTGATAGTGACGGAGATGGGAAAATCTCTGCCTTTGAACTGCGATCATTTTTTGGTTCCATTGGAGAGTATTTGTCACACGAGGAGGCTCAAGGGTTTATCCTAGACCTCGATTCCGATGGGGACAATTTGTTGAATTTTCAAGATTTCACGAAGTTGATGAATAGTGAAGATCATAGGGATGGTGAAGAGGATCTAAGGAAGGCTTTTGAGATGTTTGTGTGGGAAAAGGGGAGTGATTGTATTACCCCAAAAGGGTTGCAACGAATGTTTCACCGCCTTGGGGATGAAAAGTCCTATGACGAGTGCGTGGCTATGATTGATGCCTTTGACATAGATCGTAACGGTGTGCTTGATTTCAACGAGTTTCACCAAATGATGGCCTAG 567 0.4268 MASERILNPLKCWFSKINLKLSLNGRRSSRSSLTPCSPISSCSTVKRNSKEDEFKEVFRRFDSDGDGKISAFELRSFFGSIGEYLSHEEAQGFILDLDSDGDNLLNFQDFTKLMNSEDHRDGEEDLRKAFEMFVWEKGSDCITPKGLQRMFHRLGDEKSYDECVAMIDAFDIDRNGVLDFNEFHQMMA* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0982 188 PANTHER CALCIUM BINDING PROTEIN 17 188 - -
Apr7g0982 188 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 17 188 - -
Apr7g0982 188 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Apr7g0982 188 CDD EFh 125 188 IPR002048 GO:0005509
Apr7g0982 188 CDD EFh 53 114 IPR002048 GO:0005509
Apr7g0982 188 Pfam EF-hand domain pair 139 187 IPR002048 GO:0005509
Apr7g0982 188 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Apr7g0982 188 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Apr7g0982 188 Pfam EF-hand domain pair 52 114 IPR002048 GO:0005509
Apr7g0982 188 ProSiteProfiles EF-hand calcium-binding domain profile. 158 188 IPR002048 GO:0005509
Apr7g0982 188 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Apr7g0982 188 SUPERFAMILY EF-hand 50 187 IPR011992 -
Apr7g0982 188 Gene3D - 119 188 - -
Apr7g0982 188 Gene3D - 41 118 - -
Apr7g0982 188 SMART efh_1 53 81 IPR002048 GO:0005509
Apr7g0982 188 SMART efh_1 89 117 IPR002048 GO:0005509
Apr7g0982 188 SMART efh_1 162 188 IPR002048 GO:0005509
Apr7g0982 188 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0982 Apr-Chr7 16867091 16867731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0982 13 188 EF-hand Containing Proteins AT3G50770 53.158 1.28e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0982 K13448 - gmx:100500092 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0982 7 16867091 16867731 Apr7g0982 7 16867091 16867731 ECH
Apr3g0242 3 4432084 4433407 Apr7g0982 7 16867091 16867731 ECH