Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0242 ATGGCTACGGGGAAAATTCTCAAACCGTCAAAGTGGTTTTCAAACAGAAGTCTCAAGCTTAGTCTTCATCGTGGAAGATCAAGATTCTCCAATTCTTCACCGAGTTCTCCAAGAACTCCCACGTCAGCATGTGCAACTCCCAAGAATAATAGCAATGGAGAAAATGGGCTAATAGAAGTTTTCCGTCACTTTGATGGTGATGGAGATGGCAAAATTTCGGCCTATGAGCTAAGGTCATATTTTGGGTCCATTGGGGAGCACATGTCACATGAGGAAGCTGAAGGGGTGATTCATGACCTCGATTCCGATGGGGACAACATGTTGGATTTCAAGGATTTCACAAAGATGATGAAGAAGCAAGGAAGGGATGGTGATGATGATGATCTAAGAAAGGCTTTTGAGATGTTTGTGTGGGAAAAAGAAGGGTGTGGCTGTATTACCCCAAAAGGGTTGCAAATGATGTTGCACCGCCTTGGAGATGACAAATCCTACGATGAATGTGTGGCCATGATTGATGCCTTTGATATTGATCACAACGGGGTCCTTGATTTCAATGAGTTCCACCAAATGATGGCCTAA 579 0.437 MATGKILKPSKWFSNRSLKLSLHRGRSRFSNSSPSSPRTPTSACATPKNNSNGENGLIEVFRHFDGDGDGKISAYELRSYFGSIGEHMSHEEAEGVIHDLDSDGDNMLDFKDFTKMMKKQGRDGDDDDLRKAFEMFVWEKEGCGCITPKGLQMMLHRLGDDKSYDECVAMIDAFDIDHNGVLDFNEFHQMMA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0242 192 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Apr3g0242 192 SMART efh_1 166 192 IPR002048 GO:0005509
Apr3g0242 192 SMART efh_1 92 120 IPR002048 GO:0005509
Apr3g0242 192 SMART efh_1 56 84 IPR002048 GO:0005509
Apr3g0242 192 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Apr3g0242 192 CDD EFh 129 192 IPR002048 GO:0005509
Apr3g0242 192 MobiDBLite consensus disorder prediction 24 52 - -
Apr3g0242 192 CDD EFh 57 118 IPR002048 GO:0005509
Apr3g0242 192 Pfam EF-hand domain pair 144 191 IPR002048 GO:0005509
Apr3g0242 192 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Apr3g0242 192 Gene3D - 122 192 - -
Apr3g0242 192 Gene3D - 42 121 - -
Apr3g0242 192 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Apr3g0242 192 Pfam EF-hand domain pair 56 118 IPR002048 GO:0005509
Apr3g0242 192 PANTHER CALCIUM BINDING PROTEIN 16 192 - -
Apr3g0242 192 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 16 192 - -
Apr3g0242 192 SUPERFAMILY EF-hand 36 191 IPR011992 -
Apr3g0242 192 ProSiteProfiles EF-hand calcium-binding domain profile. 162 192 IPR002048 GO:0005509
Apr3g0242 192 ProSiteProfiles EF-hand calcium-binding domain profile. 52 87 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0242 Apr-Chr3 4432084 4433407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0242 1 192 EF-hand Containing Proteins AT3G50770 51.456 4.42e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0242 K13448 - gmx:100306370 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0242 3 4432084 4433407 Apr3g0242 3 4432084 4433407 ECH
Apr3g0242 3 4432084 4433407 Apr7g0982 7 16867091 16867731 ECH