Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0627 ATGGCAAAGAATGTGGGAATACTGGCCATGGACATCTACTTCCCTCCTGCATGCGTTCAGCAGGAAGCATTGGAGGCTCACGATGGTGTTAGTAAAGGGAAATATACCATTGGACTTGGACAAGATTGCATGTCATTCTGTACTGAATTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTTCTTCCCTTCTCGAGAAGTATGGGATTGATGCTAAACAAATAGGTCGTCTTGAAGTAGGCAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTTGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCCTGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAACTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACAGACAGTGCAGTGTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCAATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGCTTATGATTTTTACAAGCCAAATCTTGCTAGTGAATATCCAGTTGTCGATGGAAAGCTTTCGCAAACTTGTTACCTCATGGCTGTTGATTCTTGCTACAAACATTTCTGCAACAAATATGAGAAACTTGAGGGAAAAGCATTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGATTGTTTTTCAATGACTTCTTGAGGAATCCCAGCTCTGTGGATGATGTTGCCAAAGAAAAGCTGGAACCTTTTGCAACTTTATCTGGTGATGAGAGCTATCAAAGCCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTGTATGATGCCAAGGTACAACCAACGACTTTGATACCGAAGCAAGTTGGCAACATGTACACTGCATCTCTCTACGCAGCATTTGCATCCCTTCTTCACAACAAACATAGCACATTGGTTGATAAGAGGGTGATATTATTCTCATATGGAAGTGGCTTAACTGCCACAATGTTTTCTTTGCAATTACGTGATAGTCAACCTCCATTTAGCTTGGCCAACATTGCTGAAGTGATGAATGTTGATGGAAAGTTGAAGTCAAGACGCGAGTTTCCTCCGGAAGAGTTTGTTGAAACTCTGAAGCTAATGGAACATAGGTATGGTGCCAAGGAGTTTGTGACTAGCAAGGACAGTAGCCTTTTATCTGCAGGCACATTCTATCTCACCGAAGTTGACTCCATGTATAGGAGATTCTATGTAGAGAAAACTAAAGAAAATGGTTTGACTTCCTCCGTCAACGGTGGTATCGCCAACGGTGGTATCGCCAACGGTCACTGA 1419 0.4257 MAKNVGILAMDIYFPPACVQQEALEAHDGVSKGKYTIGLGQDCMSFCTELEDVISMSLTVVSSLLEKYGIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKHFCNKYEKLEGKAFSLSDAEYFVFHSPYNKLVQKSFARLFFNDFLRNPSSVDDVAKEKLEPFATLSGDESYQSRDLEKASQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHSTLVDKRVILFSYGSGLTATMFSLQLRDSQPPFSLANIAEVMNVDGKLKSRREFPPEEFVETLKLMEHRYGAKEFVTSKDSSLLSAGTFYLTEVDSMYRRFYVEKTKENGLTSSVNGGIANGGIANGH* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0627 472 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Apr7g0627 472 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 446 - -
Apr7g0627 472 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Apr7g0627 472 CDD init_cond_enzymes 4 368 - -
Apr7g0627 472 Gene3D - 1 451 IPR016039 GO:0016746
Apr7g0627 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Apr7g0627 472 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Apr7g0627 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 448 IPR013746 GO:0004421|GO:0006084|GO:0010142
Apr7g0627 472 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 448 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0627 Apr-Chr7 12932322 12938005 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0627 K01641 - gmx:100788028 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0627 7 12932322 12938005 Apr7g0627 7 12932322 12938005 ECH
Apr10g1520 10 27662305 27667752 Apr7g0627 7 12932322 12938005 PCT